Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   JZM58_RS20045 Genome accession   NZ_CP071797
Coordinates   4527890..4528558 (-) Length   222 a.a.
NCBI ID   WP_011335105.1    Uniprot ID   A0ABM5ZL40
Organism   Pseudomonas fluorescens strain YK-310     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4522890..4533558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM58_RS20035 (JZM58_20035) - 4524393..4526540 (+) 2148 WP_207983374.1 methyl-accepting chemotaxis protein -
  JZM58_RS20040 (JZM58_20040) - 4526580..4527893 (-) 1314 WP_207983375.1 sensor histidine kinase -
  JZM58_RS20045 (JZM58_20045) ciaR 4527890..4528558 (-) 669 WP_011335105.1 response regulator transcription factor Regulator
  JZM58_RS20050 (JZM58_20050) - 4528562..4528888 (-) 327 WP_207983376.1 PepSY domain-containing protein -
  JZM58_RS20055 (JZM58_20055) - 4528888..4529199 (-) 312 WP_207983377.1 PepSY domain-containing protein -
  JZM58_RS20060 (JZM58_20060) - 4529348..4530427 (+) 1080 WP_127798929.1 patatin-like phospholipase family protein -
  JZM58_RS20065 (JZM58_20065) queD 4530514..4530870 (+) 357 WP_007955941.1 6-carboxytetrahydropterin synthase QueD -
  JZM58_RS20070 (JZM58_20070) - 4530956..4531768 (+) 813 WP_207983378.1 alpha/beta hydrolase -
  JZM58_RS20075 (JZM58_20075) codB 4531942..4533213 (+) 1272 WP_007955938.1 cytosine permease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24795.26 Da        Isoelectric Point: 6.0851

>NTDB_id=478906 JZM58_RS20045 WP_011335105.1 4527890..4528558(-) (ciaR) [Pseudomonas fluorescens strain YK-310]
MRLLLVEDHVPLADELLAGLQRQGYAVDWLADGRDAVYQGSSEPYDLIVLDLGLPGVPGLEVLAQWRAGGLTIPVLILTA
RDSWAERIEGLKAGADDYLTKPFHPEELYLRIQSLLRRSKGQANQPTLKAAGLHLDEGRQCVVRDGADIQLTAAEFRLLR
YFMLHPEQILSKSHLAEHLYDGETERDSNVLEVHVNHLRRKLGKSVIETRRGQGYLFGGQAS

Nucleotide


Download         Length: 669 bp        

>NTDB_id=478906 JZM58_RS20045 WP_011335105.1 4527890..4528558(-) (ciaR) [Pseudomonas fluorescens strain YK-310]
ATGCGCTTGCTTCTGGTGGAAGACCACGTACCACTGGCCGACGAACTGCTCGCCGGCCTGCAACGTCAGGGCTACGCGGT
GGATTGGCTGGCGGACGGGCGCGATGCGGTCTATCAGGGCAGCAGCGAGCCCTATGACCTGATCGTCCTCGACCTCGGTC
TGCCCGGCGTGCCGGGGCTTGAGGTGCTGGCGCAATGGCGTGCCGGCGGTCTGACGATTCCGGTGCTGATCCTCACCGCC
CGTGATTCCTGGGCCGAGCGCATCGAGGGCCTGAAGGCTGGTGCCGACGATTACCTGACCAAACCCTTCCACCCGGAAGA
GTTGTACCTGCGGATCCAGTCGCTGCTGCGACGCTCCAAGGGCCAGGCCAACCAGCCGACGCTCAAGGCCGCAGGGCTGC
ACCTGGACGAGGGCCGCCAGTGTGTCGTGCGTGACGGCGCCGACATTCAATTGACCGCCGCTGAATTCCGCCTGCTGCGC
TATTTCATGCTGCACCCGGAACAGATCCTCTCGAAAAGCCACCTCGCCGAACACCTCTACGACGGTGAGACCGAGCGCGA
TTCCAACGTGCTTGAAGTCCACGTCAATCACCTGCGACGCAAACTCGGCAAAAGCGTGATCGAAACCCGTCGCGGTCAGG
GTTATCTGTTTGGCGGACAGGCTTCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae R6

37.727

99.099

0.374
  ciaR Streptococcus pneumoniae Rx1

37.727

99.099

0.374
  ciaR Streptococcus pneumoniae D39

37.727

99.099

0.374
  ciaR Streptococcus mutans UA159

37.727

99.099

0.374
  ciaR Streptococcus pneumoniae TIGR4

37.727

99.099

0.374
  covR Streptococcus salivarius strain HSISS4

36.161

100

0.365
  micA Streptococcus pneumoniae Cp1015

34.615

100

0.365