Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H8B22_RS06565 Genome accession   NZ_CP060820
Coordinates   1402513..1404027 (+) Length   504 a.a.
NCBI ID   WP_187713288.1    Uniprot ID   -
Organism   Agrilutibacter terrestris strain II4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1397513..1409027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8B22_RS06545 (H8B22_06545) speE 1398778..1399629 (+) 852 WP_187713284.1 polyamine aminopropyltransferase -
  H8B22_RS06550 (H8B22_06550) - 1399756..1401672 (+) 1917 WP_187713285.1 tetratricopeptide repeat-containing diguanylate cyclase -
  H8B22_RS06555 (H8B22_06555) - 1401701..1402039 (-) 339 WP_187713286.1 P-II family nitrogen regulator -
  H8B22_RS06560 (H8B22_06560) - 1402236..1402502 (+) 267 WP_187713287.1 ubiquinone biosynthesis accessory factor UbiK -
  H8B22_RS06565 (H8B22_06565) comM 1402513..1404027 (+) 1515 WP_187713288.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H8B22_RS06570 (H8B22_06570) - 1404056..1404529 (-) 474 WP_187713289.1 hypothetical protein -
  H8B22_RS06575 (H8B22_06575) - 1404563..1405060 (-) 498 WP_187713290.1 hypothetical protein -
  H8B22_RS06580 (H8B22_06580) - 1405205..1405597 (-) 393 WP_187713291.1 hypothetical protein -
  H8B22_RS06585 (H8B22_06585) - 1405769..1406962 (-) 1194 WP_187713292.1 putative peptide maturation dehydrogenase -
  H8B22_RS06590 (H8B22_06590) - 1407091..1407483 (+) 393 WP_187713293.1 NHLP-related RiPP peptide -
  H8B22_RS06595 (H8B22_06595) - 1407672..1407992 (+) 321 WP_225876301.1 NHLP-related RiPP peptide -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53764.60 Da        Isoelectric Point: 8.6694

>NTDB_id=478615 H8B22_RS06565 WP_187713288.1 1402513..1404027(+) (comM) [Agrilutibacter terrestris strain II4]
MNLALVHSRARTGVRAPAVRVEVHLSGGLPRFSLVGLPEAAVREAKDRVRAAISCAQYEFPARVITVNLAPADLPKDGGR
FDLAIALGILAASGQIPLEALGEYEFLGELGLTGELRAVDGVLPAALAAAQAGRKLVVPTGNGAEAALAAQVEVRTARTL
LEVCAMLAGRKALPCAEALPTQRTAGLDLADVRGQAHARRALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEASEAE
ALESAAIASVSGRGLDPSRWRERPFRAPHHTASAVALVGGGGEPRPGEISLAHNGVLFLDELPEWDRRALEVLREPLESG
VVTISRAARQSEFPARFQLVAAMNPCPCGWAGDSSGRCRCNPDAVRRYRARISGPLLDRIDLHVEVPRLPPAQLRPQAAT
GESSTDVRMRVLQAQQCQHRRAGQLNARLSQTDTAKHCHLGERDQLLLERAVDALQLSARSMHRILRVARTIADLDGEAD
ILGRHLTEAIGYRRADRNRETQAA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=478615 H8B22_RS06565 WP_187713288.1 1402513..1404027(+) (comM) [Agrilutibacter terrestris strain II4]
GTGAACCTCGCACTCGTGCACAGCCGTGCGCGAACGGGCGTGCGTGCGCCCGCAGTCCGGGTGGAAGTGCACCTGTCGGG
CGGATTGCCGCGCTTTTCCCTGGTCGGCCTGCCCGAAGCCGCGGTGCGCGAAGCCAAGGACCGCGTGCGCGCGGCGATCA
GCTGCGCGCAGTACGAATTCCCGGCGCGCGTGATCACCGTGAACCTGGCGCCCGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCAGTGGCCAGATCCCGCTGGAAGCGCTGGGCGAATACGAGTTCCT
CGGCGAACTGGGCCTCACCGGCGAACTGCGCGCGGTCGACGGCGTGCTGCCGGCGGCGCTCGCCGCGGCGCAGGCCGGGC
GCAAGCTGGTCGTGCCCACCGGCAATGGCGCCGAGGCGGCCCTGGCCGCGCAGGTGGAAGTGCGCACCGCGCGCACCCTG
CTGGAAGTCTGCGCGATGCTCGCCGGGCGCAAGGCACTGCCGTGTGCCGAGGCCCTGCCGACCCAACGCACTGCCGGCCT
GGACCTGGCCGATGTCCGCGGGCAGGCGCACGCGCGGCGCGCGCTGGAAATCGCCGCGGCCGGTGGCCACCACCTGCTGC
TGATCGGGCCACCCGGCTGCGGCAAGACCCTGTTGGCCTCGCGACTGCCCGGTCTGTTACCGGAAGCGAGCGAAGCCGAA
GCGCTGGAGAGCGCCGCGATCGCCTCGGTGAGCGGTCGCGGCCTGGATCCGTCGCGTTGGCGCGAGCGGCCGTTCCGCGC
GCCGCACCACACCGCCAGCGCGGTCGCCCTGGTCGGTGGCGGCGGCGAACCGCGGCCCGGCGAGATCTCGCTGGCACACA
ACGGCGTGCTGTTCCTGGACGAACTCCCGGAATGGGATCGCCGCGCGCTGGAAGTGCTGCGCGAACCGCTGGAATCCGGT
GTCGTCACCATCTCGCGCGCGGCACGGCAAAGCGAATTCCCTGCCCGCTTCCAACTGGTCGCCGCGATGAACCCGTGCCC
CTGCGGCTGGGCCGGCGACAGCAGCGGGCGTTGTCGTTGCAATCCCGATGCGGTGCGGCGTTACCGCGCGCGCATCTCCG
GGCCGTTGCTGGATCGGATCGACCTGCACGTCGAAGTGCCGCGCCTGCCGCCCGCGCAGCTGCGACCGCAAGCGGCAACC
GGTGAAAGCAGCACGGACGTGCGGATGCGGGTGCTGCAGGCGCAGCAGTGCCAGCACCGGCGCGCCGGGCAGTTGAACGC
GCGGCTCAGCCAAACCGACACCGCGAAGCACTGCCACCTGGGTGAGCGCGACCAGCTGCTGCTGGAACGCGCGGTCGATG
CGCTGCAGCTGTCGGCCCGCTCCATGCACCGGATCCTGCGGGTCGCGCGCACCATCGCCGACCTCGATGGCGAGGCGGAC
ATTCTCGGTCGGCATCTCACCGAGGCCATCGGTTACCGGCGCGCGGACCGGAACCGGGAAACCCAGGCGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.313

99.008

0.558
  comM Vibrio campbellii strain DS40M4

55.311

99.008

0.548
  comM Glaesserella parasuis strain SC1401

54.059

100

0.542
  comM Haemophilus influenzae Rd KW20

54

99.206

0.536
  comM Legionella pneumophila str. Paris

52.4

99.206

0.52
  comM Legionella pneumophila strain ERS1305867

52.4

99.206

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.866

100

0.462