Detailed information NTG0478579

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: H9N23_RS17420
• Genome accession: NZ_CP060817
• Coordinates: 3714296..3715816 (+)
• Length: 506 a.a.
• NCBI ID: WP_011257184.1
• Uniprot ID: A0A854CKZ6
• Organism: Xanthomonas oryzae pv. oryzae strain C9-3
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	3715973..3723677	3714296..3715816	flank	157

Gene organization within MGE regions

Location: 3714296..3723677

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9N23_RS17420 (H9N23_17395)	comM	3714296..3715816 (+)	1521	WP_011257184.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
H9N23_RS17425 (H9N23_17400)	-	3715973..3717292 (-)	1320	WP_118886778.1	IS701 family transposase	-
H9N23_RS17430 (H9N23_17405)	-	3717387..3718763 (-)	1377	Protein_3331	IS5 family transposase	-
H9N23_RS17435 (H9N23_17410)	-	3718902..3719942 (-)	1041	Protein_3332	IS5-like element ISXoo5 family transposase	-
H9N23_RS17440 (H9N23_17415)	-	3720031..3720480 (+)	450	Protein_3333	IS1595-like element ISXo5 family transposase	-
H9N23_RS17445 (H9N23_17420)	-	3720510..3721511 (-)	1002	Protein_3334	IS256-like element IS1113 family transposase	-
H9N23_RS17450 (H9N23_17425)	-	3721518..3722484 (-)	967	Protein_3335	IS1595-like element ISXo5 family transposase	-
H9N23_RS17455 (H9N23_17430)	-	3722573..3722761 (-)	189	Protein_3336	transposase	-
H9N23_RS17460 (H9N23_17435)	-	3722850..3723677 (+)	828	Protein_3337	IS3 family transposase	-

Sequence

Protein

• Length: 506 a.a.
• Molecular weight: 54090.89 Da
• Isoelectric Point: 8.2767

>NTDB_id=478579 H9N23_RS17420 WP_011257184.1 3714296..3715816(+) (comM) [Xanthomonas oryzae pv. oryzae strain C9-3]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQMVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALGDYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAEHVEAFTARTL
LEVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRCRVVAARQRQLARGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLHDSA
DIATRHLTEAIGYRKLDRALSAASAA

Nucleotide

• Length: 1521 bp

>NTDB_id=478579 H9N23_RS17420 WP_011257184.1 3714296..3715816(+) (comM) [Xanthomonas oryzae pv. oryzae strain C9-3]
ATGAGTCTGGCGTTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATGGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTACGTGCCGCGCTGC
TTTGCGCGCAGTTCGAATTCCCCGCACGGCGCATTACCATCAATCTGGCGCCGGCCGATCTGCCTAAGGAAGGCGGACGG
TTCGATTTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGGGCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGCATCGATGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCAGGGC
GACGGCTGATCGTGCCGCTTGCCAACGGTGCCGAAGCGGCGATTGCCGAGCACGTCGAAGCCTTCACCGCACGCACGCTG
CTTGAGGTGTGCGCGACGCTCAACGGCAGCCAGAAAGCACCTGCCGCCGAATTGGCGGTGCAGGCGCTCGGGGCCCGTGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCATCATC
TCCTTCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGTTGGCCTCGCGCCTGCCTGGGCTATTGCCCGAAGCCAGCGAA
GCCGAAGCGCTGGAAACCGCGGCCATTACCTCCATCAGCGGCCGCGGACTGGATCTGGCCCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCTCACCACACCGCCAGCGCAGTCGCCTTGGTTGGCGGTGGCACGCATCCGCGCCCCGGCGAAATCTCGCTGG
CCCACAACGGTGTCTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGGCAGACACTCGAGGTGCTGCGCGAACCGTTGGAA
TCGGGCCTGGTCACGATCTCACGCGCGGCGCGCAGCGTCGACTTCCCTGCACGCTTCCAGCTGGTCGCTGCGATGAACCC
ATGCCCATGCGGTTGGGCAGGCGACGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTATCGCAGCCGTA
TCTCCGGCCCCTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTACCACCGCAAGCGCTGCGCAGCGGCAAC
CTCGGCGAGGACAGCGCCAGCGTGCGTTGCCGCGTGGTCGCCGCGCGGCAACGCCAGCTTGCGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGCCATTGCCGTCTGCAGCACGACGACCAAGTGCTGCTCGAGCGCGCCATCG
AACACCTGCAGCTGTCTGCACGCTCGATGCATCGCATACTGCGCGTGGCACGCACCATCGCCGATCTCCACGACAGCGCA
GACATCGCCACGCGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-394)

3D structure

• AlphaFold DB: A0A854CKZ6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	56.522	100	0.565
comM	Haemophilus influenzae Rd KW20	55.186	100	0.557
comM	Glaesserella parasuis strain SC1401	54.241	100	0.543
comM	Vibrio campbellii strain DS40M4	53.953	100	0.54
comM	Legionella pneumophila str. Paris	51.71	98.221	0.508
comM	Legionella pneumophila strain ERS1305867	51.71	98.221	0.508
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.063	100	0.462