Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IAQ69_RS14025 Genome accession   NZ_CP060811
Coordinates   2921270..2922760 (+) Length   496 a.a.
NCBI ID   WP_200229197.1    Uniprot ID   A0A7T7WIR0
Organism   Acinetobacter variabilis strain XM9F202-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2916270..2927760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ69_RS14000 (IAQ69_13995) ribD 2917186..2918274 (-) 1089 WP_180048000.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  IAQ69_RS14005 (IAQ69_14000) nrdR 2918277..2918744 (-) 468 WP_004787309.1 transcriptional regulator NrdR -
  IAQ69_RS14010 (IAQ69_14005) - 2918884..2920299 (-) 1416 WP_180053833.1 ammonium transporter -
  IAQ69_RS14015 (IAQ69_14010) glnK 2920360..2920698 (-) 339 WP_004650081.1 P-II family nitrogen regulator -
  IAQ69_RS14020 (IAQ69_14015) - 2920977..2921204 (+) 228 WP_004787313.1 accessory factor UbiK family protein -
  IAQ69_RS14025 (IAQ69_14020) comM 2921270..2922760 (+) 1491 WP_200229197.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IAQ69_RS14030 (IAQ69_14025) - 2922808..2923536 (-) 729 WP_200229199.1 TorF family putative porin -
  IAQ69_RS14035 (IAQ69_14030) - 2924408..2925724 (+) 1317 WP_200229207.1 OprD family outer membrane porin -
  IAQ69_RS14040 (IAQ69_14035) ppa 2925825..2926361 (-) 537 WP_034703878.1 inorganic diphosphatase -
  IAQ69_RS14045 (IAQ69_14040) - 2926482..2926880 (-) 399 WP_200229209.1 MAPEG family protein -
  IAQ69_RS14050 (IAQ69_14045) - 2926981..2927367 (+) 387 WP_034703874.1 hypothetical protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54363.26 Da        Isoelectric Point: 7.3463

>NTDB_id=478556 IAQ69_RS14025 WP_200229197.1 2921270..2922760(+) (comM) [Acinetobacter variabilis strain XM9F202-2]
MSFAKIYTRGLLGLHAPLIEVEVHVSSGMPSLTIVGLPEAAVRESKDRVRSAILNSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPENCTDNLEFIGELALDGQLRPVTGILSIAIACQQAQHQLILPSPNAQEASQLPDFQVFAANHL
QEVCAHLAQAETLTPFKTSPVDQHSFYKFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSIANANHPFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLQAQELQDNKPVE
NSETVRQRVITAYNIQIERQNALNMSLSPKQLEQYAPLDPPAQKMIELAQQKLNLSARGYHRILRVARTIADLNQSPDIQ
TGHLSEALSYRGQQQI

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=478556 IAQ69_RS14025 WP_200229197.1 2921270..2922760(+) (comM) [Acinetobacter variabilis strain XM9F202-2]
ATGTCTTTTGCCAAAATTTATACGCGAGGCCTGTTAGGCCTGCACGCACCTTTAATTGAAGTCGAAGTTCATGTCAGTTC
TGGCATGCCTTCCCTCACCATTGTGGGGCTTCCTGAAGCTGCAGTCAGAGAAAGTAAGGATCGGGTTCGCTCAGCCATTC
TGAATAGTGGCTTTCAGTTTCCGACCAAACGCCTGACGATTAATCTGGCACCTGCCGATCTACCTAAAGATGGCTCACGT
TTGGACTTGCCGATTGCGCTAGGAATTTTAGTGGCCTCAGGGCAGCTTCCAGAAAATTGTACTGATAATCTTGAGTTTAT
TGGGGAGCTGGCCCTAGATGGTCAATTGCGGCCAGTAACAGGAATCCTGAGTATTGCAATCGCCTGCCAGCAGGCACAGC
ATCAACTGATCTTGCCTAGTCCGAATGCTCAGGAAGCCTCTCAGCTTCCGGATTTTCAGGTATTTGCTGCCAATCATTTA
CAGGAAGTCTGTGCACATCTGGCTCAAGCGGAAACCTTGACCCCGTTTAAGACCAGTCCAGTAGATCAGCACTCTTTTTA
TAAATTTGATCTGGCGGATGTGAAAGGACAATTGCGACCAAGACGTGCCTTGGAAATTGCAGCCGCTGGCGGTCATTCCC
TGCTGTTCCGCGGCCCACCTGGTACAGGTAAAACCTTATTAGCATCGCGCCTCGCCAGTATTTTACCTCCCTTAAATACT
CAGGAAAATCTGGAAGTTGCTAGTATCTATTCAATTGCCAATGCCAATCATCCCTTTGGCCAGCGGCCATTTCGGGCACC
GCATCATACTGCGTCTGCCATTGCACTGGTCGGCGGTGGCTCACATCCTAAACCTGGAGAGATCACACTGGCACATTTGG
GCGTTTTATTTCTAGACGAACTGCCTGAGTTTGACCGCAAGGTTTTAGAAGTATTACGTCAGCCGCTTGAGTCCAAAGAA
ATTGTAATCTCACGTGCTTCCCGGCAAATTACTTTTCCAGCCAATTTTCAACTGGTGGCAGCCATGAATCCTTGTCCATG
CGGTTATGCATTTAATCAGGACAGCCGCTGTCAATGTTCACCTGAAAGCATCAAGCGTTATCAGAACCGGATTTCTGGCC
CATTACTGGATCGGATTGACCTGCATATTGACGTACCACCTTTACAGGCACAGGAATTACAGGACAATAAACCTGTCGAA
AACTCTGAAACGGTCAGACAGCGCGTGATCACCGCCTATAATATTCAGATCGAACGGCAAAATGCCTTGAACATGAGTCT
TAGTCCAAAGCAACTAGAACAATACGCCCCTCTCGATCCACCAGCTCAGAAAATGATTGAACTGGCTCAGCAGAAACTGA
ATTTGTCAGCACGAGGCTATCATCGGATTTTGCGTGTTGCCCGAACCATTGCCGATCTTAACCAAAGTCCAGATATTCAG
ACTGGGCACTTATCGGAAGCCTTGTCTTATCGCGGGCAGCAGCAGATTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T7WIR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.6

100

0.52
  comM Haemophilus influenzae Rd KW20

51.703

100

0.52
  comM Legionella pneumophila str. Paris

51.21

100

0.512
  comM Legionella pneumophila strain ERS1305867

51.21

100

0.512
  comM Glaesserella parasuis strain SC1401

50

100

0.508
  comM Vibrio campbellii strain DS40M4

50.2

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.474