Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   IAQ69_RS11495 Genome accession   NZ_CP060811
Coordinates   2412123..2416640 (-) Length   1505 a.a.
NCBI ID   WP_180011984.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain XM9F202-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 2407123..2421640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ69_RS11465 (IAQ69_11460) elsL 2408168..2408680 (-) 513 WP_159123377.1 cell wall-recycling L,D-carboxypeptidase ElsL -
  IAQ69_RS11470 (IAQ69_11465) - 2408677..2409114 (-) 438 WP_125278257.1 YbaN family protein -
  IAQ69_RS11475 (IAQ69_11470) - 2409203..2410078 (+) 876 WP_004784973.1 DUF1853 family protein -
  IAQ69_RS11480 (IAQ69_11475) - 2410194..2410343 (+) 150 WP_004784975.1 entericidin A/B family lipoprotein -
  IAQ69_RS11485 (IAQ69_11480) dapE 2410467..2411603 (+) 1137 WP_004784977.1 succinyl-diaminopimelate desuccinylase -
  IAQ69_RS11490 (IAQ69_11485) - 2411664..2412122 (-) 459 WP_004784978.1 hypothetical protein -
  IAQ69_RS11495 (IAQ69_11490) chpA 2412123..2416640 (-) 4518 WP_180011984.1 Hpt domain-containing protein Regulator
  IAQ69_RS11500 (IAQ69_11495) - 2416809..2418878 (-) 2070 WP_200228923.1 methyl-accepting chemotaxis protein -
  IAQ69_RS11505 (IAQ69_11500) - 2418925..2419461 (-) 537 WP_159123371.1 chemotaxis protein CheW -
  IAQ69_RS11510 (IAQ69_11505) - 2419467..2419835 (-) 369 WP_004784985.1 response regulator -
  IAQ69_RS11515 (IAQ69_11510) pilG 2419861..2420244 (-) 384 WP_004784987.1 twitching motility response regulator PilG Regulator
  IAQ69_RS11520 (IAQ69_11515) - 2420528..2421172 (+) 645 WP_159123370.1 hypothetical protein -

Sequence


Protein


Download         Length: 1505 a.a.        Molecular weight: 168703.34 Da        Isoelectric Point: 4.2489

>NTDB_id=478538 IAQ69_RS11495 WP_180011984.1 2412123..2416640(-) (chpA) [Acinetobacter variabilis strain XM9F202-2]
MKEILKNLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELNALFPEWLSDPAHQENLKTIRRHFHTLKGSGRMVGAKSA
GEIAWAVEDTLNRVLSGSIQLTPTIQQYAKAVLNIYQFILYPKFKQVQELDVDLRPVVLLGQQLQQQITPEPALEELLQL
ADSLTAEGQITGLELGDSAEDQDTTAAIEISTTEFELEEADSEDAARSDVEETVAIFIEEAEEHLETIAKFLRSENEKVQ
DYNALIRAIHTLRGSSSMAQIEEIFEASSKVEHLFKTLLQDEIASTSKETAVLIQYAEFVSDYLHLLRQGDSSKLAAVYA
TFERVWNDYGFAATETETVETQGLVTKLVELEIDLLLDAEFEFDKRAKVDYPEYIQALSEQAAELLAHTDNRAALGIHEF
TTDLKSAYDALLEKPVLLNSDYAYELFAQAHQEFIHLFDTLAAGQRVILNDDTQKTLSELAAFVQQDLEIFAEDNVPAEQ
VSEEISIPEAATTASIDFAALSQRIASDRQYIDSAETQRDFDEDLLNIFLEEADELLVGIDEDLNTWSKKQDDTTSLNNL
MRHLHTLKGGANMITASHIGSISHELESIYERIIRQQIAVTPALIQIIRLVQDNVSDRIQSIRDEGIDYPAVEAISILQN
IQALVAGQAVAAPVETSIPVVEFEYAEASADSEQTADEASEEIALEDTSSDLEPALNLEDEQVELTETETLTEPVEIVAE
ERSEEDELKSIVEETFLEESEEILDNTEKLLNQWFDQRSDRSLLLQLQRAAHSIKGGARMVENEKVASIAYELETTFEQF
AVYHFNSNAYDGLLQKTLAWLRQAIFQRDYSNFEQIQSSLKKIAYVDVTAQLPERLAKTETLVTENSFEFVEGDGTEPPR
MMGEWIDTGNTDTSHEMIRISADLVEKMIDLSGENAINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIA
KHGSENSRYADFDPLEMDQYSSLNQLSKSLAESASDLVDFKSTLSDKIRETEGLLLQQSRIQAEIQESLMRTRLVPFDRM
LPRLQRIVRQTSTTLNRPAELIIQNSEGELDRNILERLVTPFEHMLRNAIDHGLEDTADRIALNKPEVGSILLNISRQGT
DVIVSFSDDGKGIDAEKIREKALSQGLIKEDQTLDSEELLQFIFHPGFSTAKSVTQISGRGVGLDVVQSEIKSLGGHVSV
SSEVGKGTTFTIRVPTTVAVSDALMVKVGDQQYAVSLAQIDRIVRIAPSTLETYFNSKDDFFKIDGVNYKLRYLSEFVSN
QPIPRLNNVAHSLPVLLIKGNSGQTIALLVDQLVGSRAQIVVKPIGHQFANIGVVTGATILGDGQVCLILDGQNIARQIH
GTQRVKHMQDQRDGSRSGNARRLVMIVDDSVTVRKVTSRLLERQGYDIVTAKDGVDAIEQLENVRPDLMLLDIEMPRMDG
FEVTNLVRHHDIHRELPIIMITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLIAEKQGS

Nucleotide


Download         Length: 4518 bp        

>NTDB_id=478538 IAQ69_RS11495 WP_180011984.1 2412123..2416640(-) (chpA) [Acinetobacter variabilis strain XM9F202-2]
ATGAAAGAAATATTAAAAAATTTAGTTGAAACGACAACGCTTCCTGAAGACAGTTATCTTGATCAAGATGCAGAAATTCT
TGAAATTTTTGTCGAGGAAATCGAAGAGATTTTCGTTGAGTTAAATGCTTTATTTCCAGAATGGTTGAGTGATCCGGCTC
ATCAGGAAAACCTGAAAACCATTCGCCGCCATTTTCATACCCTGAAAGGTTCAGGCCGTATGGTGGGGGCTAAATCTGCG
GGTGAAATTGCTTGGGCAGTGGAAGATACCTTAAATCGGGTACTTTCAGGCTCAATCCAGTTAACGCCTACAATTCAACA
GTATGCCAAAGCTGTACTGAATATTTACCAGTTTATTTTATATCCAAAATTCAAACAGGTGCAGGAACTCGATGTTGACC
TACGCCCAGTCGTGCTTTTAGGTCAGCAATTACAACAACAAATAACACCTGAACCGGCTTTAGAAGAACTCTTGCAACTA
GCAGACAGTCTGACTGCCGAGGGTCAGATCACAGGTCTTGAGCTAGGTGATTCGGCTGAAGATCAAGATACAACTGCAGC
AATAGAAATAAGCACAACAGAATTTGAGCTTGAAGAAGCTGATAGTGAAGATGCTGCACGTAGTGATGTAGAAGAAACCG
TGGCGATCTTTATCGAGGAAGCGGAAGAGCATCTCGAAACGATTGCCAAGTTCCTGCGTAGCGAAAATGAAAAAGTGCAG
GATTATAATGCATTGATTCGTGCTATTCATACTTTGCGCGGCAGTTCGTCCATGGCACAGATCGAAGAAATCTTCGAGGC
CAGCTCTAAAGTAGAACATCTGTTTAAAACACTGCTTCAGGATGAAATTGCATCCACCTCAAAAGAAACTGCTGTATTAA
TTCAGTATGCTGAATTTGTCAGCGACTATCTGCATTTGTTACGTCAGGGTGATAGCAGCAAACTGGCAGCAGTGTATGCG
ACTTTTGAGCGTGTCTGGAATGATTATGGCTTCGCAGCCACTGAAACGGAAACAGTTGAAACCCAAGGTCTGGTGACCAA
GCTGGTTGAACTGGAGATTGACCTGTTGCTGGATGCCGAATTTGAATTCGATAAACGGGCTAAAGTCGATTATCCGGAAT
ATATTCAGGCTTTAAGCGAGCAGGCTGCCGAGCTGCTTGCACATACAGATAACCGTGCCGCACTGGGTATTCATGAGTTT
ACGACAGATTTAAAATCTGCTTATGATGCCTTGCTGGAAAAACCGGTACTGCTGAATAGTGATTATGCTTATGAGCTGTT
TGCCCAGGCACATCAGGAATTCATTCATTTATTCGATACCCTGGCAGCAGGCCAGCGTGTCATTCTGAATGATGATACGC
AAAAAACCTTGAGTGAACTGGCTGCATTTGTACAGCAGGACCTGGAAATCTTTGCTGAAGACAATGTTCCTGCTGAACAA
GTATCAGAAGAAATTTCTATTCCTGAAGCTGCAACCACAGCCAGCATTGACTTCGCTGCTTTAAGCCAGCGTATTGCCTC
TGACCGCCAATACATCGACAGCGCAGAAACTCAGCGTGATTTCGATGAGGATCTACTGAATATCTTCCTGGAAGAAGCGG
ATGAATTACTGGTAGGTATTGATGAAGATCTGAATACCTGGAGTAAAAAGCAGGATGATACGACTTCACTGAATAACCTG
ATGCGTCACTTGCACACCTTAAAAGGTGGTGCAAACATGATTACCGCTTCTCATATCGGTTCGATTTCGCACGAACTAGA
AAGTATTTATGAGCGAATCATCCGTCAGCAGATCGCTGTTACTCCAGCGCTGATTCAAATCATTCGTCTGGTGCAAGATA
ACGTTTCTGACCGTATCCAGTCGATCCGTGATGAAGGTATCGATTATCCGGCTGTTGAAGCAATTTCGATTCTGCAAAAT
ATTCAGGCATTGGTGGCTGGTCAAGCTGTTGCAGCTCCGGTAGAAACATCGATTCCTGTTGTCGAATTTGAATATGCAGA
AGCTAGTGCTGATTCCGAACAAACAGCGGATGAAGCATCGGAAGAGATTGCATTAGAAGATACAAGTTCAGATCTAGAAC
CGGCCCTAAACTTAGAAGATGAACAAGTTGAGCTGACTGAAACAGAAACTTTGACTGAGCCAGTTGAAATTGTAGCAGAA
GAGCGCTCTGAAGAAGATGAACTGAAGTCAATTGTTGAAGAGACTTTCCTTGAAGAGTCAGAAGAGATTCTCGACAATAC
TGAAAAACTGCTGAACCAATGGTTTGATCAGCGTAGTGACCGTAGCTTATTGCTTCAATTACAACGTGCTGCCCACAGTA
TCAAGGGTGGTGCGCGCATGGTTGAAAACGAAAAGGTGGCCAGCATTGCGTATGAACTGGAAACCACTTTCGAGCAGTTT
GCGGTATATCACTTTAACTCGAATGCTTATGATGGCTTGCTGCAAAAAACACTGGCCTGGTTAAGACAAGCGATCTTCCA
GCGTGACTATAGCAATTTTGAACAGATCCAAAGCAGCCTGAAAAAGATTGCGTATGTGGATGTTACTGCGCAGCTGCCAG
AACGTCTGGCTAAAACAGAAACGCTGGTCACAGAAAATAGCTTCGAGTTTGTCGAAGGTGATGGTACTGAGCCACCACGT
ATGATGGGTGAGTGGATCGATACCGGTAATACCGATACCAGCCATGAGATGATCCGTATCTCTGCTGATCTGGTTGAGAA
GATGATCGACCTGTCAGGCGAGAATGCAATTAACCGTTCGCGTATCGAGATGGACTTAGGCCAACTTGGCAATACCCTGA
ACGAAATGGAACTGGCAATCAAACGTCTGGCGGACCAGTTGCGCCGAATGGAAGGTGAGCTGGAATCACAGATTATTGCC
AAACACGGTTCAGAAAACTCGCGTTATGCAGACTTTGACCCGCTGGAAATGGACCAATATTCGTCCCTGAACCAGTTGTC
CAAGTCGCTAGCGGAATCTGCTTCGGACTTGGTTGACTTCAAGAGCACCTTATCCGACAAGATTCGTGAAACTGAAGGTT
TGTTATTGCAACAATCACGGATTCAGGCCGAGATTCAGGAAAGCCTGATGCGTACCCGTCTGGTACCGTTTGACCGGATG
TTGCCACGTTTACAGCGTATCGTACGTCAGACTTCTACGACCTTGAACCGTCCAGCCGAACTGATTATTCAGAATAGTGA
AGGTGAATTAGACCGTAATATTCTGGAGCGTCTGGTAACGCCATTCGAGCATATGCTGCGTAATGCGATTGACCATGGTT
TGGAAGATACAGCAGATCGTATTGCCTTGAACAAACCGGAAGTCGGTTCAATCCTGTTAAATATCAGCCGTCAGGGTACA
GATGTCATCGTCTCATTTAGTGATGATGGTAAAGGTATTGATGCTGAGAAGATTCGTGAAAAAGCACTCAGCCAAGGCCT
GATCAAAGAAGATCAGACACTGGATTCGGAAGAGCTACTGCAATTCATTTTCCACCCAGGCTTCAGTACTGCTAAATCTG
TAACCCAGATTTCAGGTCGTGGTGTGGGTCTGGATGTAGTACAAAGCGAGATCAAGTCTCTGGGTGGTCACGTATCTGTC
AGCTCTGAAGTTGGCAAAGGCACAACCTTCACCATTCGCGTACCGACGACTGTAGCGGTCAGCGATGCCTTGATGGTAAA
AGTGGGCGATCAGCAATACGCCGTTTCTCTGGCGCAAATCGACCGTATTGTACGTATTGCACCATCTACTCTGGAAACTT
ACTTCAACAGTAAAGACGATTTCTTCAAGATTGATGGCGTCAATTACAAATTGCGTTACCTGTCTGAGTTCGTATCGAAT
CAGCCAATTCCTCGTCTGAACAACGTAGCGCATTCACTGCCAGTATTGCTGATTAAAGGCAACAGTGGTCAAACCATTGC
CTTACTTGTGGATCAGTTAGTAGGTTCACGTGCACAGATCGTGGTGAAACCAATCGGCCATCAGTTCGCCAATATTGGTG
TAGTCACTGGTGCGACGATTCTTGGTGATGGTCAGGTTTGTCTGATTCTGGATGGTCAGAATATTGCCCGTCAGATCCAT
GGTACGCAGCGTGTGAAACACATGCAGGATCAACGCGATGGTTCACGTTCTGGCAATGCTCGCCGTCTGGTAATGATCGT
GGATGACTCGGTGACTGTACGTAAGGTGACCTCGCGTCTACTTGAGCGTCAGGGCTATGATATAGTCACCGCCAAAGATG
GTGTAGATGCGATTGAGCAGCTTGAAAATGTCCGTCCGGATCTGATGCTGCTGGATATTGAAATGCCGCGTATGGATGGT
TTTGAGGTCACGAACCTGGTTCGTCACCACGATATTCACCGTGAACTGCCAATCATCATGATTACTTCACGTACTGGTGA
AAAACACCGTGAACGTGCTTTCAGTCTGGGCGTAACCCACTACATGGGCAAACCGTTCCAGGAAGCTGAATTACTGGCGA
ATATTCAACAGTTAATTGCTGAAAAACAGGGGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.761

100

0.615