Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H9K76_RS00220 Genome accession   NZ_CP060714
Coordinates   40510..42078 (-) Length   522 a.a.
NCBI ID   WP_187597625.1    Uniprot ID   -
Organism   Diaphorobacter ruginosibacter strain DSM 27467     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 35510..47078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K76_RS00195 (H9K76_00195) - 36028..36555 (-) 528 WP_187597620.1 shikimate kinase -
  H9K76_RS00200 (H9K76_00200) - 36678..37619 (+) 942 WP_187597621.1 YihY/virulence factor BrkB family protein -
  H9K76_RS00205 (H9K76_00205) - 37748..38194 (+) 447 WP_187597622.1 hypothetical protein -
  H9K76_RS00210 (H9K76_00210) - 38234..39007 (-) 774 WP_187597623.1 ferredoxin--NADP reductase -
  H9K76_RS00215 (H9K76_00215) - 39228..40463 (+) 1236 WP_187597624.1 ABC transporter substrate-binding protein -
  H9K76_RS00220 (H9K76_00220) comM 40510..42078 (-) 1569 WP_187597625.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H9K76_RS00225 (H9K76_00225) - 42299..43027 (+) 729 WP_187597626.1 TorF family putative porin -
  H9K76_RS00230 (H9K76_00230) - 43097..43435 (+) 339 WP_187597627.1 P-II family nitrogen regulator -
  H9K76_RS00235 (H9K76_00235) amt 43490..44902 (+) 1413 WP_187597628.1 ammonium transporter -
  H9K76_RS00240 (H9K76_00240) - 45307..46281 (+) 975 WP_187597629.1 SMP-30/gluconolactonase/LRE family protein -
  H9K76_RS00245 (H9K76_00245) - 46442..46945 (+) 504 WP_187597630.1 hypothetical protein -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 55531.45 Da        Isoelectric Point: 7.9579

>NTDB_id=477964 H9K76_RS00220 WP_187597625.1 40510..42078(-) (comM) [Diaphorobacter ruginosibacter strain DSM 27467]
MSLALVQSRALTGLAAMPVTVEVHLANGLPSFTLVGLADVEVKEARERVRSALQNAGLEFPANKKITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARFAGYEFAGELSLSGALRPVRGALATSLAIRSQSRHGSDPRQVLPPGSAEEAALVPNAQI
YRAAHLLDVVRHFLPQEVREQLPQEQGDPESGLQLLAPQERHAHASLPDLADVKGQVAAKRALEIAAAGMHCLLLVGPPG
SGKSMLAQRFAGLLPPMSEQQALESAAIASLAGRFRPEEWMQRRTSHPHHTCSAVALVGGGSPPKPGEISLAHEGVLFLD
EFPEFSRSALEALREPLETGSITISRAAQRAEYPARFTLIAAMNPCPCGHLGSGQRACRCSPEQIARYQGKLSGPLLDRI
DLHVEVPALPAEELLHAAPGESTAAIRERVVRAAGRAIARQGCANQRLQGRDIDTHAALDPAATQFLQTASVRLGWSARS
THRALKVARTIADLADCDSVRAEHVAEAMQYRRGLMGGGRKS

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=477964 H9K76_RS00220 WP_187597625.1 40510..42078(-) (comM) [Diaphorobacter ruginosibacter strain DSM 27467]
ATGAGTCTCGCTTTAGTGCAAAGCCGCGCCCTGACGGGCCTCGCGGCCATGCCGGTCACCGTCGAAGTGCATCTGGCCAA
CGGATTGCCCAGCTTCACATTGGTGGGCCTGGCGGATGTGGAGGTGAAGGAGGCGCGCGAACGGGTGCGCTCCGCGCTGC
AGAACGCCGGCCTGGAGTTCCCCGCGAACAAGAAGATCACGGTGAACCTGGCACCCGCCGACCTGCCCAAGGACTCCGGG
CGCTTCGACCTGCCGATCGCCCTGGGCATCCTCGCGGCCAGTGGCCAGATCGATGCGGCGCGGTTCGCAGGCTATGAATT
CGCGGGGGAACTGTCGCTGTCGGGTGCGCTCCGGCCGGTGCGCGGCGCACTGGCCACCAGCCTGGCGATACGCTCCCAGT
CGCGTCACGGGAGCGATCCGCGCCAGGTGCTGCCGCCGGGCAGCGCCGAGGAGGCGGCCCTCGTGCCCAACGCGCAGATC
TACCGCGCCGCCCATCTGCTGGACGTGGTGCGTCATTTCCTTCCCCAGGAAGTGCGCGAGCAACTGCCGCAGGAACAGGG
CGACCCCGAGAGCGGCCTGCAACTGCTCGCACCGCAGGAGCGCCATGCCCACGCGAGCCTCCCCGATCTGGCCGACGTGA
AGGGCCAGGTTGCCGCCAAGCGCGCCCTGGAGATCGCCGCTGCCGGCATGCACTGCCTGCTGCTGGTAGGGCCTCCGGGA
TCGGGCAAGTCGATGCTGGCCCAGCGCTTTGCGGGCCTGCTTCCCCCCATGTCGGAACAACAGGCCCTCGAGAGCGCAGC
CATCGCCAGCCTGGCCGGCCGGTTCCGGCCCGAGGAATGGATGCAGCGGCGCACCAGCCATCCACACCATACCTGCAGCG
CGGTGGCCCTGGTCGGAGGGGGCTCGCCCCCGAAGCCCGGCGAGATCTCGCTGGCGCACGAGGGCGTTCTGTTCCTGGAC
GAATTTCCCGAGTTCTCGCGCAGTGCGCTCGAGGCGCTGCGCGAGCCCCTGGAGACCGGAAGCATCACCATCTCGCGCGC
GGCACAGCGCGCGGAGTATCCTGCCCGCTTCACCCTCATTGCCGCGATGAACCCCTGCCCGTGCGGCCATCTCGGCTCGG
GACAGCGTGCGTGCCGCTGCTCACCCGAGCAGATTGCGCGCTACCAGGGGAAACTCAGCGGCCCGTTGCTCGATCGCATC
GACCTGCATGTCGAGGTGCCCGCGCTGCCCGCCGAGGAGTTGCTGCATGCCGCCCCCGGCGAGAGCACCGCCGCGATCCG
CGAGCGCGTCGTGCGTGCGGCCGGACGTGCCATCGCACGCCAGGGCTGCGCCAACCAGCGGCTGCAGGGGCGCGACATCG
ACACCCATGCCGCGCTTGATCCCGCGGCAACCCAATTCCTGCAGACGGCCTCGGTGCGACTCGGCTGGTCGGCACGCAGC
ACCCATCGCGCGCTCAAGGTGGCCCGCACGATCGCCGACCTCGCGGATTGCGACAGCGTGCGCGCGGAACACGTCGCCGA
GGCGATGCAATACCGGCGCGGGCTGATGGGCGGGGGCCGCAAGTCCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(420-512)

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(209-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.973

98.467

0.502
  comM Glaesserella parasuis strain SC1401

50.097

98.659

0.494
  comM Vibrio campbellii strain DS40M4

49.611

98.467

0.489
  comM Haemophilus influenzae Rd KW20

49.323

99.042

0.489
  comM Legionella pneumophila str. Paris

49.038

99.617

0.489
  comM Legionella pneumophila strain ERS1305867

49.038

99.617

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.269

99.617

0.431