Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NMV_RS00100 Genome accession   NC_017501
Coordinates   16989..17495 (-) Length   168 a.a.
NCBI ID   WP_014573675.1    Uniprot ID   A0A9K2KM41
Organism   Neisseria meningitidis 8013     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 11989..22495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS00095 (NMV_0017) lpxC 14960..15883 (-) 924 WP_014573674.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NMV_RS00100 (NMV_0019) pilE 16989..17495 (-) 507 WP_014573675.1 pilin Machinery gene
  NMV_RS13920 (NMV_0022) - 19501..19932 (-) 432 Protein_17 pilin -
  NMV_RS00110 (NMV_0023) - 20115..20534 (-) 420 Protein_18 pilin -
  NMV_RS15420 (NMV_0024) - 20813..21163 (-) 351 Protein_19 pilin -
  NMV_RS16045 (NMV_0024.1) - 21207..21515 (-) 309 Protein_20 pilin -
  NMV_RS16255 - 21567..21932 (-) 366 Protein_21 pilin -
  NMV_RS00125 (NMV_0026) - 21961..22290 (-) 330 WP_002218455.1 FKBP-type peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17823.15 Da        Isoelectric Point: 8.4600

>NTDB_id=47722 NMV_RS00100 WP_014573675.1 16989..17495(-) (pilE) [Neisseria meningitidis 8013]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPGDNSSAGVATSADIK
GKYVQSVTVANGVITAQMASSNVNNEIKSKKLSLWAKRQNGSVKWFCGQPVTRTTATATDVAAANGKTDDKINTKHLPST
CRDDSSAS

Nucleotide


Download         Length: 507 bp        

>NTDB_id=47722 NMV_RS00100 WP_014573675.1 16989..17495(-) (pilE) [Neisseria meningitidis 8013]
ATGAACACCCTTCAAAAAGGTTTTACCCTTATCGAGCTGATGATTGTGATTGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCTGCTTATCAAGACTACACAGCCCGCGCACAAGTTTCCGAAGCCATCCTTTTGGCTGAAGGTCAAAAATCAGCCG
TCACAGAGTATTACCTGAATCACGGCGAATGGCCCGGCGACAACAGTTCTGCCGGCGTGGCAACCTCCGCCGACATCAAA
GGCAAATATGTTCAAAGCGTTACAGTCGCAAACGGCGTCATTACCGCCCAAATGGCTTCAAGCAACGTAAACAACGAAAT
CAAAAGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAAACGGTTCGGTCAAATGGTTCTGCGGACAGCCGGTTACGCGCA
CCACCGCCACCGCCACCGACGTCGCCGCCGCCAACGGCAAGACCGACGACAAAATCAACACCAAGCACCTGCCGTCAACC
TGCCGCGATGATTCATCTGCCAGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-162)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 8P2V
  PDB 8P36
  PDB 8PIJ
  PDB 8PIZ
  PDB 8PJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

80.357

100

0.804
  pilE Neisseria gonorrhoeae MS11

77.844

99.405

0.774
  comP Acinetobacter baylyi ADP1

37.87

100

0.381
  pilA2 Legionella pneumophila strain ERS1305867

38.75

95.238

0.369
  pilA/pilA1 Eikenella corrodens VA1

36.257

100

0.369

Multiple sequence alignment