Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   H7795_RS02310 Genome accession   NZ_CP060641
Coordinates   434314..435024 (+) Length   236 a.a.
NCBI ID   WP_002985645.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY210     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 429314..440024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7795_RS02285 (H7795_02270) - 429325..430038 (+) 714 WP_301182272.1 MIP/aquaporin family protein -
  H7795_RS02290 (H7795_02275) - 430172..430741 (+) 570 WP_032466303.1 hypothetical protein -
  H7795_RS02295 (H7795_02280) - 430710..431858 (+) 1149 WP_023612721.1 acetyl-CoA C-acyltransferase -
  H7795_RS02300 (H7795_02285) - 431815..433062 (+) 1248 WP_011017492.1 AMP-binding protein -
  H7795_RS02305 (H7795_02290) - 433118..434152 (+) 1035 WP_162472284.1 DUF3114 domain-containing protein -
  H7795_RS02310 (H7795_02295) vicR 434314..435024 (+) 711 WP_002985645.1 response regulator YycF Regulator
  H7795_RS02315 (H7795_02300) vicK 435017..436369 (+) 1353 WP_002995609.1 cell wall metabolism sensor histidine kinase VicK Regulator
  H7795_RS02320 (H7795_02305) vicX 436373..437182 (+) 810 WP_023612763.1 MBL fold metallo-hydrolase Regulator
  H7795_RS02325 (H7795_02310) rnc 437625..438317 (+) 693 WP_002990670.1 ribonuclease III -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27083.99 Da        Isoelectric Point: 4.9038

>NTDB_id=477090 H7795_RS02310 WP_002985645.1 434314..435024(+) (vicR) [Streptococcus pyogenes strain TSPY210]
MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHVPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVE
LTHREFELLHHLANHMGQVMTREHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=477090 H7795_RS02310 WP_002985645.1 434314..435024(+) (vicR) [Streptococcus pyogenes strain TSPY210]
ATGAAAAAAATACTTATTGTGGATGATGAAAAACCGATTTCTGACATTATTAAGTTTAATTTGACAAAAGAAGGTTATGA
CATTGTTACAGCTTTTGATGGACGCGAAGCGGTAACAATTTTTGAAGAAGAAAAGCCAGATTTAATTATTCTTGATTTGA
TGCTCCCTGAGTTGGACGGTCTTGAAGTAGCCAAGGAAATTCGTAAAACCAGTCATGTCCCGATTATTATGTTGTCGGCT
AAAGATAGTGAGTTTGACAAGGTTATTGGACTTGAAATTGGGGCTGATGATTACGTGACCAAGCCCTTTTCTAATCGGGA
ATTGCTGGCGCGTGTCAAGGCTCATCTGCGTCGTACCGAAACTATTGAAACGGCTGTTGCAGAAGAAAATGCTTCTTCAG
GTACACAGGAACTAACCATTGGTAATTTACAGATTTTACCAGATGCGTTTGTTGCTAAAAAACATGGTCAAGAGGTAGAG
TTGACCCATCGTGAATTTGAACTATTGCATCATCTAGCTAACCATATGGGTCAGGTGATGACACGAGAACACTTATTGGA
AATTGTTTGGGGATATGATTATTTCGGCGATGTGCGCACGGTTGATGTGACTGTTCGTCGTCTCCGTGAAAAAATTGAAG
ACACACCAAGTCGTCCTGAGTATATTTTAACAAGACGTGGTGTTGGGTACTACATGAAATCTTATGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.254

100

0.903
  micA Streptococcus pneumoniae Cp1015

79.06

99.153

0.784
  covR Streptococcus salivarius strain HSISS4

44.828

98.305

0.441
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.397

98.305

0.436
  scnR Streptococcus mutans UA159

36.91

98.729

0.364