Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LLH_RS03700 Genome accession   NC_017492
Coordinates   717250..718233 (+) Length   327 a.a.
NCBI ID   WP_014572241.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris A76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 712250..723233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLH_RS03680 (llh_3795) - 712317..713153 (-) 837 WP_011676728.1 Cof-type HAD-IIB family hydrolase -
  LLH_RS03685 (llh_3800) - 713459..714880 (+) 1422 WP_011676727.1 NCS2 family permease -
  LLH_RS14210 (llh_3805) - 715113..715310 (+) 198 WP_250638141.1 alpha/beta hydrolase -
  LLH_RS03690 (llh_3810) - 715349..715936 (+) 588 WP_014572239.1 alpha/beta hydrolase -
  LLH_RS03695 (llh_3815) - 716090..717175 (+) 1086 WP_014572240.1 YdcF family protein -
  LLH_RS03700 (llh_3820) coiA 717250..718233 (+) 984 WP_014572241.1 competence protein CoiA Machinery gene
  LLH_RS03705 (llh_3825) pepF 718308..720113 (+) 1806 WP_014572242.1 oligoendopeptidase F Regulator
  LLH_RS03710 (llh_3830) - 720116..720799 (+) 684 WP_011676723.1 O-methyltransferase -
  LLH_RS03715 (llh_3835) - 720955..721881 (+) 927 WP_014572243.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 39137.86 Da        Isoelectric Point: 9.7664

>NTDB_id=47688 LLH_RS03700 WP_014572241.1 717250..718233(+) (coiA) [Lactococcus cremoris subsp. cremoris A76]
MLTAIDENNKIINLLELERKELTGKFYCPSCHAELLIKNGQIKVLHFSHKSLKSCNLWLENESEQHLGLKKILYQWFKRT
DKVEIERYLPELNQRPDLLVNDKIAIEIQCSHLSIKRLKERTENYKAHGFKVLWLMGKDLWLAEQVTKLQKNLVYFSENR
GFFYWELDFQRKKLRLKSLIHEDLRGRIICLQEEIPFGKGRLIAHLRLPYLAQKLVKIPTFKDPKLSSFIRQQLYYQSPK
WMKIQEKYYQKGENLLTKKFEGPYIAPLGLNLLESFTDEMTITTFTQIDQNVKLYYENFLINFQRNSLEMLYPPCFYAIM
GKQKKEK

Nucleotide


Download         Length: 984 bp        

>NTDB_id=47688 LLH_RS03700 WP_014572241.1 717250..718233(+) (coiA) [Lactococcus cremoris subsp. cremoris A76]
ATGCTGACAGCAATTGATGAAAATAATAAAATAATAAACTTACTGGAATTAGAACGCAAAGAATTGACCGGGAAATTTTA
TTGTCCTTCTTGTCATGCAGAGCTACTTATTAAAAATGGGCAGATAAAAGTTCTTCATTTTTCCCATAAATCTCTAAAGA
GCTGCAATTTATGGTTGGAAAATGAGTCAGAACAGCATTTAGGTTTGAAAAAAATATTATATCAGTGGTTTAAAAGGACT
GACAAAGTCGAAATTGAACGCTATTTGCCCGAACTTAACCAAAGACCAGATTTATTAGTAAATGACAAAATCGCTATTGA
GATACAATGCTCTCATTTATCTATTAAGCGCCTCAAAGAACGTACAGAAAATTATAAGGCGCATGGCTTTAAAGTGCTTT
GGTTGATGGGAAAGGATTTATGGCTGGCTGAACAGGTGACAAAACTTCAAAAAAATTTAGTTTATTTCTCGGAAAATAGA
GGATTCTTTTATTGGGAGTTAGATTTTCAGAGGAAAAAATTAAGATTAAAATCTCTTATTCATGAGGATTTACGCGGCAG
AATCATTTGCTTACAAGAGGAAATTCCTTTTGGAAAAGGACGACTTATTGCGCATCTACGCTTACCTTATTTGGCGCAAA
AACTGGTGAAAATTCCTACTTTTAAAGATCCTAAACTTTCTAGTTTTATTCGTCAGCAATTATACTATCAATCACCAAAA
TGGATGAAAATTCAAGAAAAATATTATCAAAAAGGAGAAAATTTACTGACGAAAAAATTTGAAGGTCCATACATTGCTCC
ACTAGGTTTAAATTTACTAGAGAGTTTTACTGACGAAATGACGATCACAACTTTTACTCAGATTGATCAAAATGTTAAGC
TTTACTATGAAAATTTTTTAATAAATTTCCAAAGAAATAGCCTTGAAATGCTCTATCCTCCCTGTTTCTATGCTATAATG
GGAAAGCAGAAAAAGGAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

96.942

100

0.969
  coiA Streptococcus mitis NCTC 12261

44.136

99.083

0.437
  coiA Streptococcus pneumoniae TIGR4

42.901

99.083

0.425
  coiA Streptococcus pneumoniae Rx1

42.901

99.083

0.425
  coiA Streptococcus pneumoniae D39

42.901

99.083

0.425
  coiA Streptococcus pneumoniae R6

42.901

99.083

0.425

Multiple sequence alignment