Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LLH_RS03705 Genome accession   NC_017492
Coordinates   718308..720113 (+) Length   601 a.a.
NCBI ID   WP_014572242.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris A76     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 713308..725113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLH_RS03685 (llh_3800) - 713459..714880 (+) 1422 WP_011676727.1 NCS2 family permease -
  LLH_RS14210 (llh_3805) - 715113..715310 (+) 198 WP_250638141.1 alpha/beta hydrolase -
  LLH_RS03690 (llh_3810) - 715349..715936 (+) 588 WP_014572239.1 alpha/beta hydrolase -
  LLH_RS03695 (llh_3815) - 716090..717175 (+) 1086 WP_014572240.1 YdcF family protein -
  LLH_RS03700 (llh_3820) coiA 717250..718233 (+) 984 WP_014572241.1 competence protein CoiA Machinery gene
  LLH_RS03705 (llh_3825) pepF 718308..720113 (+) 1806 WP_014572242.1 oligoendopeptidase F Regulator
  LLH_RS03710 (llh_3830) - 720116..720799 (+) 684 WP_011676723.1 O-methyltransferase -
  LLH_RS03715 (llh_3835) - 720955..721881 (+) 927 WP_014572243.1 peptidyl-prolyl cis-trans isomerase -
  LLH_RS03720 (llh_3840) alaS 722143..724761 (+) 2619 WP_011676721.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69976.67 Da        Isoelectric Point: 4.9158

>NTDB_id=47689 LLH_RS03705 WP_014572242.1 718308..720113(+) (pepF) [Lactococcus cremoris subsp. cremoris A76]
MVKNRNEIPEALTWDLTTIFSTDQKWETELEKVKKELSLVETNDKGHLLDSAETLLTITKNMLSISQKVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVNFGESYAFYEPEFLKITKETYEQWLEILQELKNYDHMFERLFAKKEHILSQKEEKILAA
AGEIFESPSETFEIFDNADVKFPFVKNELGEKIQLTHGNYSSLMESKNREVRKAAYEALYSNYEQYQHTYAKTLQTNVKV
HNFNAQIRAYDSARQAALMSNFVPEKVYDVLIEGIHQHLPLLHRYIELRKKILGISDFKMYDIYTPLSNLDYKFNYTEGV
KKAQEVLAIFGEEYSQKVKAAFDERWIDVEENVGKRSGAYSGGSYDTKAFILLNWQGTLDDLFTLVHEMGHSIHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESNDEKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEVDAEGEVLTSE
FLNSLYGELNEKYYGLSAKENPEIQFEWARIPHFYYNFYVFQYATGFAAASFLAEKVVHGSATDRQNYLDYLKAGSSAYP
LDVIAKAGVNMESTDYLESAFKLFEKRLNELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=47689 LLH_RS03705 WP_014572242.1 718308..720113(+) (pepF) [Lactococcus cremoris subsp. cremoris A76]
ATGGTAAAAAATAGAAATGAAATCCCTGAAGCCTTGACTTGGGATTTGACAACAATTTTTTCAACAGATCAAAAATGGGA
AACAGAATTAGAGAAGGTAAAAAAAGAGCTTTCGCTTGTTGAGACAAATGATAAAGGTCATTTACTTGATTCAGCAGAAA
CTTTACTGACAATTACTAAAAATATGCTATCAATTTCTCAAAAAGTTGAAAAGCTTTATGTTTATGCTTCAATGAAAAAT
GATCAAGATACAAGAGAAGCAAAGTATCAAGAATATCAATCAAAAGCAACGGCCCTCTATGTTAATTTTGGGGAAAGCTA
TGCCTTTTATGAACCTGAGTTTTTAAAAATTACAAAAGAAACCTACGAACAATGGTTAGAAATCCTTCAGGAATTGAAAA
ATTACGATCACATGTTTGAACGTTTATTTGCTAAAAAAGAACATATCCTTAGTCAAAAAGAAGAAAAAATATTGGCGGCA
GCGGGTGAAATCTTTGAAAGTCCTTCGGAGACTTTTGAAATTTTCGATAATGCAGATGTTAAATTTCCTTTTGTTAAAAA
TGAATTGGGAGAAAAGATTCAGTTGACACATGGAAATTATAGCTCTCTTATGGAAAGTAAAAACAGGGAAGTAAGAAAAG
CGGCTTATGAAGCACTTTACAGCAATTATGAACAATATCAGCATACCTATGCAAAAACTTTGCAGACCAATGTAAAAGTT
CATAATTTCAATGCCCAAATACGCGCATATGATTCAGCACGTCAGGCAGCTTTGATGAGTAATTTTGTTCCAGAAAAAGT
TTATGACGTCTTGATAGAAGGCATTCATCAACACTTACCACTTTTACATCGCTATATTGAATTACGTAAAAAAATCTTAG
GAATTTCTGATTTCAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTCAATTACACTGAAGGAGTT
AAGAAAGCGCAAGAAGTGCTTGCAATTTTTGGTGAAGAGTATAGTCAGAAAGTTAAAGCGGCTTTTGATGAACGTTGGAT
TGATGTTGAAGAAAATGTCGGGAAACGGTCAGGGGCATACTCAGGTGGTTCTTATGATACCAAGGCATTCATATTACTCA
ATTGGCAAGGGACATTGGACGATCTTTTTACATTGGTTCATGAGATGGGGCATTCTATTCACAGCACTTTTACGAGGGAA
AATCAACCTTATGTTTATGGAGATTACCCAATCTTCTTAGCAGAGATTGCTTCAACTACCAATGAAAATATTTTAACTGA
GACTTTGCTCAAAGAAAGCAATGATGAAAAGGAACGTTTTGCTCTTTTGAACCATTGGTTAGATAGTTTTCGAGGAACCG
TATTTCGTCAAAGTCAATTTGCTGAATTTGAACAAAAAATTCACGAAGTCGATGCTGAAGGTGAAGTATTGACGAGCGAA
TTTTTGAATTCTCTTTATGGCGAACTTAATGAAAAATATTATGGCTTATCTGCCAAAGAAAATCCTGAAATTCAGTTTGA
ATGGGCAAGAATTCCGCATTTCTATTATAATTTTTACGTTTTTCAATACGCAACAGGCTTTGCCGCAGCCTCATTTCTAG
CTGAAAAAGTGGTGCATGGTTCGGCTACTGACCGCCAAAATTATCTTGATTATTTAAAAGCTGGTTCATCAGCCTATCCA
CTAGACGTGATTGCAAAAGCTGGAGTTAATATGGAATCTACAGATTACTTAGAGTCTGCTTTTAAGCTTTTTGAAAAACG
TTTGAATGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

63.894

100

0.639

Multiple sequence alignment