Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H9L11_RS04740 Genome accession   NZ_CP060589
Coordinates   1004682..1005221 (-) Length   179 a.a.
NCBI ID   WP_005381235.1    Uniprot ID   A0AAW9BS04
Organism   Vibrio sp. sp1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 999682..1010221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L11_RS04720 (H9L11_04720) - 1000001..1000333 (-) 333 WP_005381196.1 hypothetical protein -
  H9L11_RS04725 (H9L11_04725) gspM 1000326..1000976 (-) 651 WP_170894159.1 type II secretion system protein GspM -
  H9L11_RS04730 (H9L11_04730) - 1000973..1002418 (-) 1446 WP_167415479.1 MSHA biogenesis protein MshI -
  H9L11_RS04735 (H9L11_04735) csrD 1002430..1004439 (-) 2010 WP_191116183.1 RNase E specificity factor CsrD -
  H9L11_RS04740 (H9L11_04740) ssb 1004682..1005221 (-) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  H9L11_RS04745 (H9L11_04745) qstR 1005499..1006143 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  H9L11_RS04750 (H9L11_04750) galU 1006303..1007175 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  H9L11_RS04755 (H9L11_04755) uvrA 1007325..1010147 (+) 2823 WP_033907424.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19892.93 Da        Isoelectric Point: 4.9164

>NTDB_id=476760 H9L11_RS04740 WP_005381235.1 1004682..1005221(-) (ssb) [Vibrio sp. sp1]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QSQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=476760 H9L11_RS04740 WP_005381235.1 1004682..1005221(-) (ssb) [Vibrio sp. sp1]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTCTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

46.328

98.883

0.458
  ssb Neisseria gonorrhoeae MS11

46.328

98.883

0.458