Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   H9L11_RS04745 Genome accession   NZ_CP060589
Coordinates   1005499..1006143 (+) Length   214 a.a.
NCBI ID   WP_005381237.1    Uniprot ID   A0A2I3CB98
Organism   Vibrio sp. sp1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1000499..1011143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L11_RS04730 (H9L11_04730) - 1000973..1002418 (-) 1446 WP_167415479.1 MSHA biogenesis protein MshI -
  H9L11_RS04735 (H9L11_04735) csrD 1002430..1004439 (-) 2010 WP_191116183.1 RNase E specificity factor CsrD -
  H9L11_RS04740 (H9L11_04740) ssb 1004682..1005221 (-) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  H9L11_RS04745 (H9L11_04745) qstR 1005499..1006143 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  H9L11_RS04750 (H9L11_04750) galU 1006303..1007175 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  H9L11_RS04755 (H9L11_04755) uvrA 1007325..1010147 (+) 2823 WP_033907424.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24397.32 Da        Isoelectric Point: 9.8721

>NTDB_id=476761 H9L11_RS04745 WP_005381237.1 1005499..1006143(+) (qstR) [Vibrio sp. sp1]
MRKSAYARKLFLISMEDNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=476761 H9L11_RS04745 WP_005381237.1 1005499..1006143(+) (qstR) [Vibrio sp. sp1]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACGGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAGGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CB98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

94.86

100

0.949
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

51.869

100

0.519