Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   SPN032672_RS00185 Genome accession   NC_021003
Coordinates   31879..32490 (+) Length   203 a.a.
NCBI ID   WP_061631169.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN032672     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 26879..37490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN032672_RS00155 - 27480..28562 (+) 1083 Protein_31 alpha amylase N-terminal ig-like domain-containing protein -
  SPN032672_RS14055 - 28556..29460 (+) 905 Protein_32 relaxase -
  SPN032672_RS14215 - 29457..29633 (-) 177 Protein_33 helix-turn-helix domain-containing protein -
  SPN032672_RS13150 - 29713..29775 (+) 63 WP_133457516.1 SHP2/SHP3 family peptide pheromone -
  SPN032672_RS13530 - 30051..30404 (+) 354 WP_231633727.1 lanthionine synthetase LanC family protein -
  SPN032672_RS00180 - 30394..31710 (+) 1317 WP_001844303.1 cysteine peptidase family C39 domain-containing protein -
  SPN032672_RS00185 comA 31879..32490 (+) 612 WP_061631169.1 ATP-binding cassette domain-containing protein Regulator
  SPN032672_RS00190 - 32533..32703 (+) 171 WP_000757486.1 hypothetical protein -
  SPN032672_RS00195 - 32737..33465 (+) 729 WP_001018881.1 ABC transporter ATP-binding protein -
  SPN032672_RS00200 - 33458..34195 (+) 738 WP_000593057.1 ABC transporter permease -
  SPN032672_RS00205 - 34208..34933 (+) 726 WP_000771191.1 hypothetical protein -
  SPN032672_RS00210 - 35436..36389 (-) 954 WP_001155321.1 IS30-like element ISSpn8 family transposase -
  SPN032672_RS00215 - 36721..36942 (+) 222 WP_000286251.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22280.84 Da        Isoelectric Point: 7.1356

>NTDB_id=47651 SPN032672_RS00185 WP_061631169.1 31879..32490(+) (comA) [Streptococcus pneumoniae SPN032672]
MTIEPGQRIALVGQSGSGKSTLSKILSGLYKIDTGKILFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKNEV
TSQKIEEVCKAVQIYDEIMAMPMKFNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIQS
QDCTQIIIAHRLSTIKDADIIFVMKGGKIVESGNHKYLMDLGG

Nucleotide


Download         Length: 612 bp        

>NTDB_id=47651 SPN032672_RS00185 WP_061631169.1 31879..32490(+) (comA) [Streptococcus pneumoniae SPN032672]
TTGACTATTGAGCCAGGACAGAGAATTGCACTAGTCGGTCAATCGGGGTCAGGAAAAAGTACGTTATCAAAAATACTATC
AGGATTATATAAGATTGATACAGGAAAAATTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAATATTAAGTC
AAAATTTAGGAGTAGTTCCACAGGATTCATTTTTATTGAACCGAAGTATTCTTGATAATATAACTTTAAAGAACGAAGTT
ACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAATTTAATAC
TATCATCTCAGAGATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACGGATAGCACTGGCACGTGCATTAATAAATAATC
CTAGTATTGTAATTTTAGATGAAGCAACTAGTGCATTAGACACTATTAATGAGGAAAGAATAACAAAGTATATACAAAGT
CAGGATTGTACTCAAATAATTATAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTTTTGTAATGAAAGGTGG
TAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGGATCTTGGTGGATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(1-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

44.878

100

0.453
  comA Streptococcus mitis SK321

44.39

100

0.448
  comA Streptococcus gordonii str. Challis substr. CH1

43.478

100

0.443
  comA Streptococcus pneumoniae R6

43.415

100

0.438
  comA Streptococcus pneumoniae Rx1

43.415

100

0.438
  comA Streptococcus pneumoniae D39

43.415

100

0.438
  comA Streptococcus pneumoniae TIGR4

42.439

100

0.429
  comA/nlmT Streptococcus mutans UA159

42.079

99.507

0.419
  rcrQ Streptococcus mutans UA159

36.946

100

0.369

Multiple sequence alignment