Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | H8N04_RS12925 | Genome accession | NZ_CP060491 |
| Coordinates | 2539336..2539839 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain WH39 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2518773..2539839 | 2539336..2539839 | within | 0 |
Gene organization within MGE regions
Location: 2518773..2539839
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H8N04_RS12765 (H8N04_12770) | - | 2518773..2519024 (-) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| H8N04_RS12770 (H8N04_12775) | - | 2519324..2519587 (+) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| H8N04_RS12775 (H8N04_12780) | - | 2519725..2520297 (-) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| H8N04_RS12780 (H8N04_12785) | - | 2520478..2520846 (-) | 369 | WP_000849177.1 | YxeA family protein | - |
| H8N04_RS12785 (H8N04_12790) | selX | 2521215..2521826 (-) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| H8N04_RS12790 (H8N04_12795) | - | 2522032..2522733 (+) | 702 | Protein_2471 | tyrosine-type recombinase/integrase | - |
| H8N04_RS12795 (H8N04_12800) | - | 2522772..2523710 (+) | 939 | WP_001822249.1 | Abi family protein | - |
| H8N04_RS12800 (H8N04_12805) | - | 2524250..2524693 (-) | 444 | WP_000022885.1 | GNAT family N-acetyltransferase | - |
| H8N04_RS12805 (H8N04_12810) | - | 2524812..2525138 (-) | 327 | WP_000679756.1 | DUF1433 domain-containing protein | - |
| H8N04_RS12810 (H8N04_12815) | - | 2525231..2526442 (+) | 1212 | WP_009558370.1 | hypothetical protein | - |
| H8N04_RS12815 (H8N04_12820) | - | 2526444..2526833 (+) | 390 | WP_000362902.1 | hypothetical protein | - |
| H8N04_RS12820 (H8N04_12825) | - | 2526950..2527309 (+) | 360 | WP_000935290.1 | hypothetical protein | - |
| H8N04_RS12825 (H8N04_12830) | - | 2527384..2527953 (-) | 570 | WP_159343919.1 | terminase small subunit | - |
| H8N04_RS12830 (H8N04_12835) | - | 2527950..2528162 (-) | 213 | WP_078065371.1 | pathogenicity island family protein | - |
| H8N04_RS12835 (H8N04_12840) | - | 2528294..2528821 (-) | 528 | WP_000771356.1 | spore coat protein | - |
| H8N04_RS12840 (H8N04_12845) | - | 2528872..2529090 (-) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| H8N04_RS12845 (H8N04_12850) | - | 2529108..2529686 (-) | 579 | WP_000846292.1 | hypothetical protein | - |
| H8N04_RS12850 (H8N04_12855) | - | 2529698..2530039 (-) | 342 | WP_001161659.1 | hypothetical protein | - |
| H8N04_RS12855 (H8N04_12860) | - | 2530386..2531027 (-) | 642 | WP_048665662.1 | pathogenicity island protein | - |
| H8N04_RS12860 (H8N04_12865) | - | 2531029..2531301 (-) | 273 | WP_001149389.1 | hypothetical protein | - |
| H8N04_RS12865 (H8N04_12870) | - | 2531288..2532091 (-) | 804 | WP_000148373.1 | bifunctional DNA primase/polymerase | - |
| H8N04_RS12870 (H8N04_12875) | - | 2532267..2533883 (-) | 1617 | WP_048665658.1 | hypothetical protein | - |
| H8N04_RS12875 (H8N04_12880) | tscT | 2533958..2534257 (-) | 300 | WP_048665656.1 | type II toxin-antitoxin system toxin TscT | - |
| H8N04_RS12880 (H8N04_12885) | - | 2534258..2534641 (-) | 384 | WP_000403843.1 | hypothetical protein | - |
| H8N04_RS12885 (H8N04_12890) | - | 2534601..2534846 (-) | 246 | WP_001171847.1 | hypothetical protein | - |
| H8N04_RS12890 (H8N04_12895) | - | 2534831..2534986 (-) | 156 | WP_000784886.1 | hypothetical protein | - |
| H8N04_RS12895 (H8N04_12900) | - | 2534998..2535270 (-) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| H8N04_RS12900 (H8N04_12905) | - | 2535271..2535483 (-) | 213 | WP_048665654.1 | helix-turn-helix domain-containing protein | - |
| H8N04_RS12905 (H8N04_12910) | - | 2535627..2536325 (+) | 699 | WP_048665652.1 | helix-turn-helix domain-containing protein | - |
| H8N04_RS12910 (H8N04_12915) | - | 2536778..2537992 (+) | 1215 | WP_048665650.1 | tyrosine-type recombinase/integrase | - |
| H8N04_RS12915 (H8N04_12920) | - | 2538028..2538654 (+) | 627 | WP_233231932.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| H8N04_RS12920 (H8N04_12925) | rpsR | 2539042..2539284 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| H8N04_RS12925 (H8N04_12930) | ssbA | 2539336..2539839 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=476332 H8N04_RS12925 WP_000934799.1 2539336..2539839(-) (ssbA) [Staphylococcus aureus strain WH39]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=476332 H8N04_RS12925 WP_000934799.1 2539336..2539839(-) (ssbA) [Staphylococcus aureus strain WH39]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |