Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H3W50_RS18155 Genome accession   NZ_CP060441
Coordinates   3687781..3688266 (-) Length   161 a.a.
NCBI ID   WP_000157061.1    Uniprot ID   A0AAU7IP99
Organism   Citrobacter cronae strain S175-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3670644..3702151 3687781..3688266 within 0


Gene organization within MGE regions


Location: 3670644..3702151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3W50_RS18065 - 3670644..3671069 (+) 426 WP_087901757.1 putative zinc ribbon protein -
  H3W50_RS18070 - 3671695..3671817 (+) 123 Protein_3537 transcriptional regulator -
  H3W50_RS18075 tnpC 3671818..3672564 (-) 747 Protein_3538 IS66 family transposase -
  H3W50_RS18080 tnpC 3672606..3674141 (-) 1536 WP_001000409.1 IS66 family transposase -
  H3W50_RS18085 tnpB 3674191..3674538 (-) 348 WP_000609174.1 IS66 family insertion sequence element accessory protein TnpB -
  H3W50_RS26205 tnpA 3674535..3674918 (-) 384 WP_001201739.1 IS66-like element accessory protein TnpA -
  H3W50_RS18090 - 3675001..3675237 (-) 237 Protein_3542 IS66 family transposase -
  H3W50_RS18095 tnpB 3675262..3675597 (-) 336 Protein_3543 IS66 family insertion sequence element accessory protein TnpB -
  H3W50_RS18100 tnpA 3675584..3675913 (-) 330 WP_040235205.1 IS66 family insertion sequence element accessory protein TnpA -
  H3W50_RS18105 - 3676020..3676937 (-) 918 WP_087901758.1 LysR substrate-binding domain-containing protein -
  H3W50_RS18110 dcuC 3677073..3678344 (+) 1272 WP_040235202.1 C4-dicarboxylate transporter DcuC -
  H3W50_RS18115 - 3678357..3679667 (+) 1311 WP_087901759.1 amidohydrolase -
  H3W50_RS18120 tnpA 3680167..3680592 (+) 426 WP_038635492.1 IS66-like element accessory protein TnpA -
  H3W50_RS18125 tnpB 3680589..3680939 (+) 351 WP_038635488.1 IS66 family insertion sequence element accessory protein TnpB -
  H3W50_RS18130 tnpC 3680970..3682394 (+) 1425 Protein_3550 IS66 family transposase -
  H3W50_RS18135 - 3682625..3683363 (+) 739 Protein_3551 IS3 family transposase -
  H3W50_RS18140 ltrA 3684036..3685544 (+) 1509 WP_038635474.1 group II intron reverse transcriptase/maturase -
  H3W50_RS18145 - 3685628..3686107 (+) 480 Protein_3553 IS3 family transposase -
  H3W50_RS18150 - 3686148..3687730 (-) 1583 Protein_3554 conjugal transfer protein TrbC -
  H3W50_RS18155 ssb 3687781..3688266 (-) 486 WP_000157061.1 single-stranded DNA-binding protein Machinery gene
  H3W50_RS26210 ykgR 3688632..3688733 (-) 102 WP_001313396.1 small membrane protein YkgR -
  H3W50_RS18160 - 3688914..3691295 (-) 2382 WP_038635468.1 glycoside hydrolase family 31 protein -
  H3W50_RS18165 - 3691310..3691999 (-) 690 Protein_3558 MFS transporter -
  H3W50_RS18170 - 3692051..3692748 (+) 698 WP_151884388.1 IS1 family transposase -
  H3W50_RS18175 - 3692764..3693387 (-) 624 Protein_3560 MFS transporter -
  H3W50_RS18180 - 3693649..3694719 (+) 1071 WP_000412404.1 LacI family DNA-binding transcriptional regulator -
  H3W50_RS26215 - 3694744..3694974 (-) 231 WP_001703923.1 hypothetical protein -
  H3W50_RS18185 - 3695117..3696160 (-) 1044 WP_000999850.1 tetratricopeptide repeat protein -
  H3W50_RS18190 - 3696571..3697783 (-) 1213 Protein_3564 tyrosine-type recombinase/integrase -
  H3W50_RS18200 - 3698440..3699822 (+) 1383 WP_038635456.1 glycoside-pentoside-hexuronide family transporter -
  H3W50_RS18205 yicI 3699833..3702151 (+) 2319 WP_038635453.1 alpha-xylosidase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17685.62 Da        Isoelectric Point: 7.2017

>NTDB_id=476193 H3W50_RS18155 WP_000157061.1 3687781..3688266(-) (ssb) [Citrobacter cronae strain S175-1]
MASKGINKVILIGYLGQDPDIRYMPNGGAVASIALATSETWRDKQTGEMREQTEWHRVVLFGKLAEVASEYLRKGAQVYI
DGQLRTRKWTDQTGQERYTTEVVVHTGGTMQMLGSRQNSAQGGRGQPQQPQQGRQFSGNSPSPGNTAMSGSFSDDDDSIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=476193 H3W50_RS18155 WP_000157061.1 3687781..3688266(-) (ssb) [Citrobacter cronae strain S175-1]
ATGGCCTCTAAAGGTATTAACAAAGTTATTCTGATAGGGTATCTGGGTCAGGACCCGGATATTCGCTATATGCCAAACGG
CGGCGCTGTGGCCAGCATTGCGCTGGCCACCTCCGAAACCTGGCGGGACAAACAGACAGGGGAGATGCGGGAACAAACCG
AATGGCACCGCGTGGTGCTGTTCGGCAAACTGGCGGAAGTAGCCAGTGAATACCTGCGCAAAGGAGCTCAGGTGTACATC
GATGGTCAGCTGCGTACCCGAAAATGGACCGACCAGACCGGCCAGGAACGCTACACGACTGAAGTGGTGGTGCATACCGG
CGGTACCATGCAGATGCTGGGCTCCCGGCAGAATAGTGCACAGGGTGGCCGGGGACAGCCTCAACAACCACAACAGGGCA
GACAGTTTTCAGGTAATTCGCCATCTCCGGGCAATACCGCCATGTCCGGCAGTTTCAGCGACGATGACGACAGTATCCCG
TTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.757

100

0.646
  ssb Glaesserella parasuis strain SC1401

52.632

94.41

0.497
  ssb Neisseria meningitidis MC58

41.477

100

0.453
  ssb Neisseria gonorrhoeae MS11

41.477

100

0.453
  ssb Latilactobacillus sakei subsp. sakei 23K

32.402

100

0.36