Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H3W50_RS17145 Genome accession   NZ_CP060441
Coordinates   3495599..3497119 (+) Length   506 a.a.
NCBI ID   WP_038634615.1    Uniprot ID   -
Organism   Citrobacter cronae strain S175-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3490599..3502119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3W50_RS17125 - 3492155..3493084 (-) 930 WP_003829030.1 branched-chain amino acid transaminase -
  H3W50_RS17130 ilvM 3493102..3493365 (-) 264 WP_038634609.1 acetolactate synthase 2 small subunit -
  H3W50_RS17135 ilvG 3493362..3495008 (-) 1647 WP_038634612.1 acetolactate synthase 2 catalytic subunit -
  H3W50_RS17140 ilvL 3495148..3495246 (-) 99 WP_001311244.1 ilv operon leader peptide -
  H3W50_RS17145 comM 3495599..3497119 (+) 1521 WP_038634615.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H3W50_RS17150 maoP 3497145..3497483 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  H3W50_RS17155 hdfR 3497590..3498435 (+) 846 WP_087856748.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55221.17 Da        Isoelectric Point: 7.0252

>NTDB_id=476190 H3W50_RS17145 WP_038634615.1 3495599..3497119(+) (comM) [Citrobacter cronae strain S175-1]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTAHNLDTYELVGELALTGTLRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QSVCAFLEGKHDLDRPLSADFTPEPLADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSTTIQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSAMKG
EDSATVKQRVIAAQERQYRRQNKLNAHLDSQDIHEYCRLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADLEQCDHI
TRQHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=476190 H3W50_RS17145 WP_038634615.1 3495599..3497119(+) (comM) [Citrobacter cronae strain S175-1]
ATGTCACTATCGATTGTTCATACACGCGCCGCGCTTGGCGTGAATGCGCCAGCCATTACCATTGAGGTACATATCAGCAA
TGGTCTACCTGGTTTAACCATGGTGGGATTGCCAGAAACAACGGTGAAAGAGGCCCGCGATCGGGTTCGCAGTGCGATTA
TTAATAGTGGGTATGAATTCCCGGCGAAGAAGATAACCATTAACCTCGCTCCTGCCGATCTTCCCAAAGAAGGAGGGCGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACAGCCCATAATCTCGATACCTACGAGCTGGT
AGGCGAATTAGCGCTTACAGGCACGCTACGCGGCGTTCCAGGAGCGATTTCAAGCGCAACCGAAGCCATACGAGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCCGCTGAAGTTGGACTGATACATGGTGAAGGGTGTCTGATTGCCGATCACCTA
CAGTCCGTATGCGCATTTCTCGAAGGGAAGCATGATTTAGACAGACCGTTATCTGCAGACTTCACGCCAGAGCCATTAGC
CGATGATCTGAGCGATGTCATCGGTCAGGAACAAGGCAAACGCGGGTTGGAGCTCACTGCGGCTGGCGGTCACAACCTGC
TGCTTATCGGCCCTCCGGGGACGGGAAAGACCATGCTGGCCAGTCGCCTCAGAGGACTACTTCCGCCGCTCAGCAACGAT
GAGGCACTAGAAAGTGCTGCGATACTCAGCCTGGTCAATTCCACTACGATACAAAAACAATGGAAGCAGCGCCCCTTTCG
CTCACCGCATCACAGTGCTTCATTAACCGCCATGGTAGGTGGCGGGTCTATTCCTGCGCCGGGAGAGATCTCTCTGGCGC
ATAACGGCATACTATTTCTGGATGAATTACCTGAGTTTGAGCGACGCACGTTGGATGCCCTGCGTGAACCTATCGAGTCC
GGGCAGATCCATTTATCCCGCACTCGGGCTAAAATAACCTACCCTGCACGCTTTCAACTCATTGCTGCAATGAATCCAAG
CCCAACGGGTCATTATCAGGGGAACCATAACCGCTGCACCCCAGAGCAGACGCTGCGTTACCTCAATCGATTATCAGGAC
CGTTTCTTGACCGTTTCGATCTCTCCCTCGAAATCCCTTTGCCTCCGCCCGGCATACTCAGCCAGAGTGCGATGAAAGGG
GAAGATAGCGCAACGGTGAAGCAACGCGTTATCGCCGCACAAGAGCGTCAGTATCGGCGGCAAAATAAGTTAAACGCGCA
TCTGGACAGTCAGGATATACATGAATATTGCCGACTTCGCAGTGATGATGCGCAGTGGCTTGAAGAGACATTAGCGCATC
TCGGATTGTCTATCCGCGCCTGGCTGCGATTGATAAAGGTCGCCCGAACCATCGCGGATCTCGAGCAATGTGATCATATT
ACCCGTCAGCACTTGCAGGAGGCCGTTGGGTATAGGGCGATAGACAGGTTACTCATTCATTTGCAGAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.73

100

0.583
  comM Glaesserella parasuis strain SC1401

57.76

100

0.581
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Vibrio campbellii strain DS40M4

57.54

99.605

0.573
  comM Legionella pneumophila str. Paris

47.082

98.221

0.462
  comM Legionella pneumophila strain ERS1305867

47.082

98.221

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.056

99.605

0.429