Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H3V66_RS23190 Genome accession   NZ_CP060440
Coordinates   4820079..4820609 (+) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain M158-1-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4815079..4825609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3V66_RS23180 - 4815837..4816643 (-) 807 WP_240023437.1 MipA/OmpV family protein -
  H3V66_RS23185 uvrA 4816973..4819801 (-) 2829 WP_240023438.1 excinuclease ABC subunit UvrA -
  H3V66_RS23190 ssb 4820079..4820609 (+) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H3V66_RS23195 - 4820639..4821349 (-) 711 WP_126179229.1 class I SAM-dependent methyltransferase -
  H3V66_RS23200 - 4821361..4821741 (-) 381 WP_049278419.1 hypothetical protein -
  H3V66_RS23205 - 4821899..4822375 (+) 477 WP_048325626.1 Rrf2 family transcriptional regulator -
  H3V66_RS23210 - 4822413..4823162 (-) 750 WP_110158509.1 3-oxoacyl-ACP reductase family protein -
  H3V66_RS23215 - 4823295..4824212 (+) 918 WP_110158508.1 LysR family transcriptional regulator -
  H3V66_RS23220 - 4824268..4824528 (-) 261 WP_049201479.1 YdgH/BhsA/McbA-like domain containing protein -
  H3V66_RS23225 - 4824725..4825168 (+) 444 WP_049273741.1 lipocalin-like domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=476180 H3V66_RS23190 WP_004936793.1 4820079..4820609(+) (ssb) [Serratia marcescens strain M158-1-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=476180 H3V66_RS23190 WP_004936793.1 4820079..4820609(+) (ssb) [Serratia marcescens strain M158-1-1]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCCCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAAGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364