Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   JS609_RS13915 Genome accession   NZ_CP071043
Coordinates   2687529..2688224 (-) Length   231 a.a.
NCBI ID   WP_015251546.1    Uniprot ID   -
Organism   Bacillus subtilis isolate ELA2001105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2682529..2693224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS13890 (JS609_02728) minD 2683465..2684271 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  JS609_RS13895 (JS609_02729) minC 2684273..2684953 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  JS609_RS13900 (JS609_02730) mreD 2685006..2685524 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  JS609_RS13905 (JS609_02731) mreC 2685521..2686393 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  JS609_RS13910 (JS609_02732) mreB 2686424..2687437 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  JS609_RS13915 (JS609_02733) ysxA/radC 2687529..2688224 (-) 696 WP_015251546.1 RadC family protein Machinery gene
  JS609_RS13920 (JS609_02734) maf 2688261..2688830 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  JS609_RS13925 (JS609_02735) spoIIB 2688983..2689978 (-) 996 WP_225722069.1 stage II sporulation protein SpoIIB -
  JS609_RS13930 (JS609_02736) comC 2690112..2690858 (-) 747 WP_213414577.1 prepilin peptidase Machinery gene
  JS609_RS13935 (JS609_02737) folC 2690997..2692289 (-) 1293 WP_163189548.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26165.52 Da        Isoelectric Point: 8.3195

>NTDB_id=475863 JS609_RS13915 WP_015251546.1 2687529..2688224(-) (ysxA/radC) [Bacillus subtilis isolate ELA2001105]
MVIRDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=475863 JS609_RS13915 WP_015251546.1 2687529..2688224(-) (ysxA/radC) [Bacillus subtilis isolate ELA2001105]
TTGGTCATACGCGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCACAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTCGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAGGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424