Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H7696_RS01785 Genome accession   NZ_CP060386
Coordinates   384920..385459 (+) Length   179 a.a.
NCBI ID   WP_005381235.1    Uniprot ID   A0AAW9BS04
Organism   Vibrio alginolyticus strain Vb1833     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 379920..390459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7696_RS01770 (H7696_01770) uvrA 379994..382816 (-) 2823 WP_170897625.1 excinuclease ABC subunit UvrA -
  H7696_RS01775 (H7696_01775) galU 382966..383838 (-) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  H7696_RS01780 (H7696_01780) qstR 383998..384642 (-) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  H7696_RS01785 (H7696_01785) ssb 384920..385459 (+) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  H7696_RS01790 (H7696_01790) csrD 385702..387711 (+) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  H7696_RS01795 (H7696_01795) - 387723..389168 (+) 1446 WP_005387799.1 hypothetical protein -
  H7696_RS01800 (H7696_01800) gspM 389165..389815 (+) 651 WP_005381197.1 type II secretion system protein GspM -
  H7696_RS01805 (H7696_01805) - 389808..390140 (+) 333 WP_005381196.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19892.93 Da        Isoelectric Point: 4.9164

>NTDB_id=475562 H7696_RS01785 WP_005381235.1 384920..385459(+) (ssb) [Vibrio alginolyticus strain Vb1833]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QSQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=475562 H7696_RS01785 WP_005381235.1 384920..385459(+) (ssb) [Vibrio alginolyticus strain Vb1833]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACGGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

46.328

98.883

0.458
  ssb Neisseria gonorrhoeae MS11

46.328

98.883

0.458