Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   H7696_RS01780 Genome accession   NZ_CP060386
Coordinates   383998..384642 (-) Length   214 a.a.
NCBI ID   WP_005381237.1    Uniprot ID   A0A2I3CB98
Organism   Vibrio alginolyticus strain Vb1833     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 378998..389642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7696_RS01770 (H7696_01770) uvrA 379994..382816 (-) 2823 WP_170897625.1 excinuclease ABC subunit UvrA -
  H7696_RS01775 (H7696_01775) galU 382966..383838 (-) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  H7696_RS01780 (H7696_01780) qstR 383998..384642 (-) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  H7696_RS01785 (H7696_01785) ssb 384920..385459 (+) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  H7696_RS01790 (H7696_01790) csrD 385702..387711 (+) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  H7696_RS01795 (H7696_01795) - 387723..389168 (+) 1446 WP_005387799.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24397.32 Da        Isoelectric Point: 9.8721

>NTDB_id=475561 H7696_RS01780 WP_005381237.1 383998..384642(-) (qstR) [Vibrio alginolyticus strain Vb1833]
MRKSAYARKLFLISMEDNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=475561 H7696_RS01780 WP_005381237.1 383998..384642(-) (qstR) [Vibrio alginolyticus strain Vb1833]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACGGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTACGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAGGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CB98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

94.86

100

0.949
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

51.869

100

0.519