Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   JYA46_RS02175 Genome accession   NZ_CP070991
Coordinates   376392..377396 (+) Length   334 a.a.
NCBI ID   WP_001005767.1    Uniprot ID   Q6GG63
Organism   Staphylococcus aureus strain CBS2016-05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 371392..382396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA46_RS02140 (JYA46_000428) mreD 372134..372664 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  JYA46_RS02145 (JYA46_000429) rplU 372831..373139 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  JYA46_RS02150 (JYA46_000430) - 373145..373465 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  JYA46_RS02155 (JYA46_000431) rpmA 373477..373761 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  JYA46_RS02160 (JYA46_000432) obgE 373984..375276 (+) 1293 WP_072491712.1 GTPase ObgE -
  JYA46_RS02165 (JYA46_000433) - 375289..375744 (+) 456 WP_000368902.1 ACT domain-containing protein -
  JYA46_RS02170 (JYA46_000434) ruvA 375758..376360 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  JYA46_RS02175 (JYA46_000435) ruvB 376392..377396 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  JYA46_RS02180 (JYA46_000436) queA 377398..378423 (+) 1026 WP_072491713.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  JYA46_RS02185 (JYA46_000437) tgt 378446..379585 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  JYA46_RS02190 (JYA46_000438) yajC 379604..379864 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37718.00 Da        Isoelectric Point: 5.0865

>NTDB_id=475442 JYA46_RS02175 WP_001005767.1 376392..377396(+) (ruvB) [Staphylococcus aureus strain CBS2016-05]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=475442 JYA46_RS02175 WP_001005767.1 376392..377396(+) (ruvB) [Staphylococcus aureus strain CBS2016-05]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGCCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGAATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTCTTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAACCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6GG63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.951

97.605

0.644
  ruvB Streptococcus pneumoniae TIGR4

58.182

98.802

0.575
  ruvB Streptococcus pneumoniae R6

57.879

98.802

0.572
  ruvB Streptococcus pneumoniae D39

57.879

98.802

0.572
  ruvB Helicobacter pylori 26695

56.481

97.006

0.548
  ruvB Synechocystis sp. PCC 6803

53.75

95.808

0.515