Detailed information NTG0475441

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: JYA46_RS02170
• Genome accession: NZ_CP070991
• Coordinates: 375758..376360 (+)
• Length: 200 a.a.
• NCBI ID: WP_000271547.1
• Uniprot ID: Q2YT88
• Organism: Staphylococcus aureus strain CBS2016-05
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 370758..381360

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JYA46_RS02130 (JYA46_000426)	-	370975..371094 (+)	120	WP_000840603.1	hypothetical protein	-
JYA46_RS02135 (JYA46_000427)	mreC	371292..372134 (+)	843	WP_031868768.1	rod shape-determining protein MreC	-
JYA46_RS02140 (JYA46_000428)	mreD	372134..372664 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
JYA46_RS02145 (JYA46_000429)	rplU	372831..373139 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
JYA46_RS02150 (JYA46_000430)	-	373145..373465 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
JYA46_RS02155 (JYA46_000431)	rpmA	373477..373761 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
JYA46_RS02160 (JYA46_000432)	obgE	373984..375276 (+)	1293	WP_072491712.1	GTPase ObgE	-
JYA46_RS02165 (JYA46_000433)	-	375289..375744 (+)	456	WP_000368902.1	ACT domain-containing protein	-
JYA46_RS02170 (JYA46_000434)	ruvA	375758..376360 (+)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
JYA46_RS02175 (JYA46_000435)	ruvB	376392..377396 (+)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
JYA46_RS02180 (JYA46_000436)	queA	377398..378423 (+)	1026	WP_072491713.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
JYA46_RS02185 (JYA46_000437)	tgt	378446..379585 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
JYA46_RS02190 (JYA46_000438)	yajC	379604..379864 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22262.46 Da
• Isoelectric Point: 6.0240

>NTDB_id=475441 JYA46_RS02170 WP_000271547.1 375758..376360(+) (ruvA) [Staphylococcus aureus strain CBS2016-05]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=475441 JYA46_RS02170 WP_000271547.1 375758..376360(+) (ruvA) [Staphylococcus aureus strain CBS2016-05]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA, C-terminal domain (RuvA_C) (156-197)

• RuvA N terminal domain (RuvA_N) (1-61)

3D structure

• AlphaFold DB: Q2YT88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425