Detailed information NTG0047484

Bioinformatically predicted

Overview

• Name: comA
• Type: Regulator
• Locus tag: LJP_RS03030
• Genome accession: NC_017477
• Coordinates: 644524..646683 (+)
• Length: 719 a.a.
• NCBI ID: WP_014567253.1
• Uniprot ID: -
• Organism: Lactobacillus johnsonii DPC 6026
• Function: processing and transport of ComC (predicted from homology) Competence regulation

Genomic Context

Location: 639524..651683

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJP_RS02995 (LJP_0573)	-	640454..641047 (+)	594	WP_014567248.1	HlyD family efflux transporter periplasmic adaptor subunit	-
LJP_RS03000 (LJP_0574)	-	641174..641401 (+)	228	WP_014567249.1	bacteriocin class II family protein	-
LJP_RS03005 (LJP_0575)	-	641412..641600 (+)	189	WP_011161712.1	Blp family class II bacteriocin	-
LJP_RS03010 (LJP_0576)	-	641687..642061 (+)	375	WP_011161713.1	hypothetical protein	-
LJP_RS10015	-	642442..642588 (+)	147	WP_420864525.1	helix-turn-helix domain-containing protein	-
LJP_RS03015 (LJP_0578c)	-	642519..643079 (-)	561	Protein_593	IS30 family transposase	-
LJP_RS03020 (LJP_0579)	-	643082..643711 (+)	630	WP_014567251.1	GHKL domain-containing protein	-
LJP_RS03025 (LJP_0580)	-	643714..644511 (+)	798	WP_014567252.1	LytR/AlgR family response regulator transcription factor	-
LJP_RS03030 (LJP_0581)	comA	644524..646683 (+)	2160	WP_014567253.1	peptide cleavage/export ABC transporter	Regulator
LJP_RS03035 (LJP_0582)	-	646694..647287 (+)	594	WP_014567254.1	hypothetical protein	-
LJP_RS03040 (LJP_0583)	-	647437..647631 (+)	195	WP_004896927.1	hypothetical protein	-
LJP_RS03045 (LJP_0584)	-	647744..648034 (+)	291	WP_011161719.1	bacteriocin immunity protein	-
LJP_RS03050 (LJP_0585)	-	648317..648592 (+)	276	WP_014567255.1	hypothetical protein	-
LJP_RS03060 (LJP_0587)	-	648797..649027 (+)	231	WP_004896932.1	hypothetical protein	-
LJP_RS03065 (LJP_0588)	-	649150..649464 (+)	315	WP_004896933.1	bacteriocin immunity protein	-
LJP_RS03070 (LJP_0589)	-	649467..649751 (+)	285	WP_004896934.1	hypothetical protein	-

Sequence

Protein

• Length: 719 a.a.
• Molecular weight: 81082.30 Da
• Isoelectric Point: 7.0026

>NTDB_id=47484 LJP_RS03030 WP_014567253.1 644524..646683(+) (comA) [Lactobacillus johnsonii DPC 6026]
MLFKYKSVYVPQVDEMDCGVACLAMILKQYHSRVSLAHLRHEARTNLEGTTALGLVKTAQKFNFKTEAVKADMSLFNEDS
IQYPFIVHVLKQGELLHYYVVLKNTKHYLVIADPDPSVGIIKMPKDKFAQEWTGIALFMVPNEDFEPIKEKKNNLWSLFP
YMFKQKRLMINIILAALLMTIISICSSYFVQGIIDTYIPDGTYQTLSILAVGLLIAYIFNSIFSYGQNFLLNVLGQRLSI
DLNLQYIRHIFELPMEFFVTRRTGEITSRFSDASRIIDALASTVISLFLDLAIVIVMGIVLAAQNMTLFGITLLALPVYA
VVILGFTKKFEKLNDEQMESNAVLSSSVIEDIQGIETIKALNSEDTRYRRIDSQFVNYLKKSFKYSKAESLQTALKTFIQ
LSLNVIILWVGARVVIQGQMSIGQLMTFNALLSYFIDPLQNIINLQPRLQSASVAQNRLNEVYQVQSEFNADTSIQNSAA
LEGMIEYKHVHYRYGYGTDVLKNINLKIKPDEKLAIVGMSGSGKSTMVKLLVDFFSPSKGEVTLNGHATSEVNKHTLRSY
VNYVPQTPYIFSGTVKENLLLGCRPDISEEDVIKACQIAGIDQEIASLPLQFETKLDENAKILSGGQKQRLTIARALLSP
AKVFIFDEVTSGLDTITEKRVVDNLMKLKDKTIIFIAHRLAIAERADKVVVIDQGQIVEEGSHEELMEQHGFYYDLVKG

Nucleotide

• Length: 2160 bp

>NTDB_id=47484 LJP_RS03030 WP_014567253.1 644524..646683(+) (comA) [Lactobacillus johnsonii DPC 6026]
ATGTTATTCAAATATAAATCTGTTTATGTACCTCAAGTAGATGAAATGGATTGCGGAGTTGCTTGTCTAGCAATGATTTT
AAAGCAGTATCATTCTCGTGTATCTTTAGCACATTTGCGTCATGAAGCTCGCACAAATCTTGAAGGTACAACTGCGCTGG
GACTAGTTAAAACAGCACAGAAATTTAATTTTAAAACTGAAGCCGTAAAAGCTGATATGTCTCTTTTTAATGAGGATAGT
ATTCAATACCCTTTTATTGTGCATGTTCTTAAGCAAGGAGAATTACTTCATTATTACGTAGTTCTTAAAAATACTAAGCA
TTACTTAGTAATTGCCGACCCAGATCCATCAGTTGGCATAATAAAGATGCCTAAAGATAAATTTGCTCAAGAATGGACTG
GTATTGCGCTTTTTATGGTTCCGAATGAAGATTTTGAACCAATTAAAGAAAAGAAAAATAACCTATGGTCTCTCTTTCCA
TATATGTTTAAGCAAAAGCGGCTGATGATTAATATCATTTTAGCCGCTTTATTAATGACAATAATTAGTATTTGTAGTTC
ATACTTTGTGCAAGGAATAATCGATACTTATATTCCCGATGGAACTTATCAGACTCTTTCAATTTTAGCTGTTGGACTAT
TAATTGCTTATATTTTTAATTCAATCTTTTCTTATGGACAGAATTTTTTATTAAATGTTCTAGGTCAAAGATTAAGTATT
GATTTAAACCTCCAATATATAAGGCATATTTTTGAATTGCCAATGGAATTCTTTGTGACTAGAAGAACTGGTGAAATAAC
CTCACGTTTCTCTGATGCAAGTAGAATTATTGATGCTCTAGCAAGTACTGTTATTTCACTTTTCTTAGACTTAGCGATTG
TAATTGTAATGGGAATAGTGTTAGCTGCTCAAAATATGACTTTATTTGGAATCACATTATTAGCTTTACCAGTATATGCT
GTAGTAATTCTGGGATTTACTAAGAAATTTGAAAAGTTAAATGATGAACAAATGGAGAGCAATGCAGTACTAAGTTCTTC
AGTCATCGAAGATATTCAAGGTATTGAAACTATCAAAGCTCTCAATAGTGAAGATACAAGATATCGTAGAATCGATAGCC
AATTTGTAAATTATTTAAAGAAGTCATTTAAATATAGTAAGGCTGAGAGTTTGCAGACGGCGTTAAAGACATTTATTCAA
CTATCTCTTAATGTAATTATTTTATGGGTTGGCGCACGAGTAGTGATACAAGGACAGATGAGTATCGGTCAATTAATGAC
TTTTAATGCATTACTATCTTATTTCATTGACCCACTTCAAAATATTATTAACTTACAACCTCGTCTTCAATCAGCTAGTG
TTGCACAAAATAGATTGAACGAGGTTTATCAGGTGCAAAGTGAATTTAATGCAGATACTTCTATCCAGAACTCAGCTGCT
TTAGAAGGAATGATTGAATACAAGCATGTTCATTATCGATATGGTTATGGGACGGATGTTTTAAAAAACATTAATCTAAA
AATTAAGCCAGATGAAAAATTAGCAATTGTTGGCATGAGTGGATCAGGAAAATCGACAATGGTTAAGTTACTCGTTGATT
TCTTTTCACCAAGTAAGGGAGAAGTAACTTTAAATGGTCATGCAACTAGTGAAGTTAATAAACATACCTTACGCTCATAT
GTTAACTATGTTCCTCAAACGCCATATATCTTTTCTGGAACAGTTAAGGAGAATTTATTACTCGGCTGCAGACCGGATAT
TAGCGAAGAAGATGTAATTAAAGCCTGTCAGATTGCTGGAATTGATCAGGAGATAGCTAGTTTGCCACTACAATTCGAGA
CAAAGTTAGATGAGAATGCCAAGATTTTATCCGGTGGACAAAAGCAGAGATTAACTATTGCTAGAGCATTACTCTCGCCA
GCAAAAGTTTTTATCTTTGATGAAGTAACAAGTGGCTTAGATACAATTACAGAAAAAAGAGTAGTTGACAATCTTATGAA
ACTAAAAGACAAGACAATCATTTTTATTGCACACCGTCTAGCCATTGCGGAACGTGCGGATAAAGTAGTTGTAATTGATC
AGGGGCAAATTGTTGAAGAAGGAAGTCATGAAGAGCTTATGGAGCAACATGGTTTTTATTATGACTTAGTAAAGGGATAG

Domains

Predicted by InterproScan.

• ABC transporter transmembrane region (ABC_membrane) (169-439)

• ABC transporter (ABC_tran) (501-651)

• Peptidase C39 family (Peptidase_C39) (7-143)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Streptococcus mitis NCTC 12261	56.601	99.026	0.56
comA	Streptococcus mitis SK321	56.32	99.026	0.558
comA	Streptococcus pneumoniae Rx1	56.32	99.026	0.558
comA	Streptococcus pneumoniae D39	56.32	99.026	0.558
comA	Streptococcus pneumoniae R6	56.32	99.026	0.558
comA	Streptococcus pneumoniae TIGR4	56.18	99.026	0.556
comA	Streptococcus gordonii str. Challis substr. CH1	55.337	99.026	0.548
comA/nlmT	Streptococcus mutans UA159	53.041	98.331	0.522