Detailed information NTG0047483

Bioinformatically predicted

Overview

• Name: comA
• Type: Regulator
• Locus tag: LJP_RS02985
• Genome accession: NC_017477
• Coordinates: 636632..638818 (+)
• Length: 728 a.a.
• NCBI ID: WP_014567246.1
• Uniprot ID: -
• Organism: Lactobacillus johnsonii DPC 6026
• Function: processing and transport of ComC (predicted from homology) Competence regulation

Genomic Context

Location: 631632..643818

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJP_RS02950 (LJP_0564)	-	631711..632244 (+)	534	WP_014567242.1	PadR family transcriptional regulator	-
LJP_RS02955 (LJP_0565)	-	632345..633139 (+)	795	WP_014567243.1	DUF4097 family beta strand repeat-containing protein	-
LJP_RS02960 (LJP_0566)	-	633126..633374 (+)	249	WP_228370381.1	hypothetical protein	-
LJP_RS02965 (LJP_0567c)	udk	633401..634036 (-)	636	WP_004895448.1	uridine kinase	-
LJP_RS02970 (LJP_0568)	-	634365..634517 (+)	153	WP_004896917.1	hypothetical protein	-
LJP_RS02975 (LJP_0569)	-	634618..635814 (+)	1197	WP_014567244.1	GHKL domain-containing protein	-
LJP_RS02980 (LJP_0570)	-	635822..636619 (+)	798	WP_014567245.1	LytR/AlgR family response regulator transcription factor	-
LJP_RS02985 (LJP_0571)	comA	636632..638818 (+)	2187	WP_014567246.1	peptide cleavage/export ABC transporter	Regulator
LJP_RS02990 (LJP_0572c)	-	638940..640157 (-)	1218	WP_014567247.1	IS110 family transposase	-
LJP_RS02995 (LJP_0573)	-	640454..641047 (+)	594	WP_014567248.1	HlyD family efflux transporter periplasmic adaptor subunit	-
LJP_RS03000 (LJP_0574)	-	641174..641401 (+)	228	WP_014567249.1	bacteriocin class II family protein	-
LJP_RS03005 (LJP_0575)	-	641412..641600 (+)	189	WP_011161712.1	Blp family class II bacteriocin	-
LJP_RS03010 (LJP_0576)	-	641687..642061 (+)	375	WP_011161713.1	hypothetical protein	-
LJP_RS10015	-	642442..642588 (+)	147	WP_420864525.1	helix-turn-helix domain-containing protein	-
LJP_RS03015 (LJP_0578c)	-	642519..643079 (-)	561	Protein_593	IS30 family transposase	-
LJP_RS03020 (LJP_0579)	-	643082..643711 (+)	630	WP_014567251.1	GHKL domain-containing protein	-

Sequence

Protein

• Length: 728 a.a.
• Molecular weight: 82171.80 Da
• Isoelectric Point: 8.1824

>NTDB_id=47483 LJP_RS02985 WP_014567246.1 636632..638818(+) (comA) [Lactobacillus johnsonii DPC 6026]
MLFKYKSVYVPQVDEMDCGVACLAMILKQYHSRISLAHLRHEARTNLEGTTALGLVKTAQKFNLKTEAVKADMSLFNDDG
IQYPFIAHVLKQGELLHYYVVLKNTKNYLLIADPDPSVGVIKMPKDRFAQEWTGIALFMVPNENFEPIKEKKNNLWSLFP
YMFKQKRLMINIILAALLMTIISICSSYFVQGIIDTYIPSGTYQTLSILAVGLLIAYVFNSIFSYGQNFLLNVLGQRLSI
DLNLQYIRHIFELPMEFFVTRRTGEITSRFSDASRIIDALASTVISLFLDLSIVIVMGLVLAAQSMTLFGITLLALPIYA
VVILGFTKKFEKLNNEQMESNAVLSSSVIEDIQGIETIKALNSENTRYRRIDSQFVDYLKKSFKYSKTESLQTALKTFIQ
LSLNVIILWVGAKVVMQGQLSIGQLMTFNALLAYFIDPLQNIINLQPRLQSASVAQNRLNEVYQVKSEFNQKTAIEDCKL
LEGNIEYKNVDYRYGYGADVLKDINLKINQGEKLTIVGMSGSGKSTMVKLLVDFFSPSKGQVILNGHATSEINKHSLRSY
VNYVPQTPYIFSGTVRENLLLGCRPDITEEDVIEACQIAEIDQEIANLPLQFETKLDENAKILSGGQKQRLTIARALLSP
AKVFIFDEVTSGLDTITEKRVIDNLMKLKDKTIIFIAHRLAIAERADKVVVIDRGQIVEEGSHSELMNMHGFFYVKSSII
RSLASFFI

Nucleotide

• Length: 2187 bp

>NTDB_id=47483 LJP_RS02985 WP_014567246.1 636632..638818(+) (comA) [Lactobacillus johnsonii DPC 6026]
ATGTTATTCAAATATAAATCTGTTTATGTACCTCAAGTAGATGAGATGGATTGCGGAGTTGCTTGTTTAGCGATGATCTT
AAAACAATATCATTCTCGTATATCTTTAGCTCATTTACGTCATGAAGCGCGTACTAATCTTGAAGGAACAACTGCTTTAG
GGTTAGTTAAAACAGCCCAGAAATTTAATTTAAAAACAGAAGCCGTAAAGGCAGATATGTCTTTATTTAATGATGACGGT
ATTCAGTATCCTTTTATTGCTCACGTACTTAAACAGGGAGAATTGCTTCACTATTATGTGGTGCTAAAAAATACTAAAAA
TTATTTATTAATTGCCGATCCAGATCCTTCAGTTGGTGTGATAAAAATGCCTAAAGATAGGTTCGCTCAAGAATGGACAG
GGATTGCACTCTTTATGGTTCCCAATGAAAACTTTGAACCAATTAAAGAAAAGAAGAATAACCTATGGTCTCTCTTTCCA
TATATGTTTAAACAAAAGCGGCTAATGATTAATATCATTTTAGCCGCTTTATTAATGACCATAATTAGTATCTGTAGTTC
ATATTTTGTTCAAGGAATAATTGATACTTATATTCCAAGTGGTACTTATCAGACTTTATCAATCTTAGCAGTCGGATTGT
TAATTGCTTATGTCTTTAATTCTATCTTCTCCTATGGACAGAATTTTTTGCTAAATGTTTTAGGACAAAGATTAAGTATT
GATTTAAATCTTCAATATATTAGACATATTTTTGAATTACCGATGGAATTTTTTGTAACAAGAAGAACGGGTGAAATTAC
TTCACGTTTTTCTGATGCAAGTAGAATTATTGATGCTTTGGCAAGTACGGTTATCTCGCTTTTCTTAGATCTATCAATTG
TAATCGTAATGGGATTAGTATTAGCGGCTCAGAGTATGACTTTGTTTGGAATCACATTATTGGCTTTACCTATTTATGCA
GTTGTAATTCTAGGTTTTACTAAAAAGTTTGAAAAATTAAATAATGAGCAAATGGAAAGTAATGCTGTTTTGAGTTCGTC
AGTTATTGAAGACATTCAAGGAATTGAAACAATTAAAGCATTAAATAGTGAGAATACAAGGTATAGAAGAATCGATAGTC
AGTTTGTAGATTACTTAAAAAAATCTTTTAAATACAGCAAAACTGAGAGCTTGCAGACAGCACTCAAGACATTTATTCAA
TTATCTCTTAATGTAATTATTCTTTGGGTTGGTGCAAAAGTTGTAATGCAAGGACAATTGAGCATTGGTCAGTTGATGAC
TTTTAATGCGTTGCTGGCATATTTTATTGATCCACTGCAAAATATTATTAATCTGCAACCGCGACTTCAATCAGCTAGTG
TTGCTCAAAATCGATTGAATGAGGTCTATCAAGTAAAAAGTGAATTCAATCAGAAGACTGCTATTGAAGATTGTAAGCTC
CTAGAAGGAAATATTGAATATAAGAATGTGGATTATCGCTATGGTTATGGTGCAGATGTCTTAAAAGATATTAATCTAAA
AATTAACCAGGGCGAAAAATTAACGATTGTTGGAATGAGTGGATCTGGAAAATCAACAATGGTTAAGTTGTTAGTAGATT
TCTTTTCGCCAAGTAAGGGTCAAGTCATTTTAAATGGCCATGCAACAAGTGAGATTAATAAGCATAGCTTGCGATCATAT
GTGAATTATGTACCTCAAACCCCATATATCTTTTCTGGAACAGTTAGAGAGAATTTGTTGTTAGGTTGTAGGCCAGATAT
CACTGAAGAAGATGTAATAGAGGCTTGTCAGATTGCTGAGATTGACCAAGAAATAGCTAATCTACCTTTGCAATTTGAAA
CAAAATTAGATGAAAATGCAAAAATTCTATCTGGTGGACAAAAACAAAGGTTAACAATTGCTCGGGCATTATTATCTCCT
GCAAAGGTATTTATCTTTGATGAAGTAACAAGTGGCTTAGATACAATTACTGAGAAGAGAGTAATTGATAATTTGATGAA
GCTCAAAGATAAGACAATTATTTTTATCGCACACCGTCTGGCAATTGCGGAACGAGCAGATAAGGTTGTTGTAATTGATC
GTGGCCAGATAGTTGAAGAAGGCAGTCACAGCGAATTGATGAATATGCATGGCTTTTTCTACGTAAAGTCAAGCATAATA
AGAAGTTTGGCTTCATTTTTTATTTAA

Domains

Predicted by InterproScan.

• ABC transporter transmembrane region (ABC_membrane) (169-439)

• Peptidase C39 family (Peptidase_C39) (7-143)

• ABC transporter (ABC_tran) (501-651)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Streptococcus mitis NCTC 12261	57.203	97.253	0.556
comA	Streptococcus mitis SK321	56.921	97.253	0.554
comA	Streptococcus pneumoniae Rx1	56.78	97.253	0.552
comA	Streptococcus pneumoniae D39	56.78	97.253	0.552
comA	Streptococcus pneumoniae R6	56.78	97.253	0.552
comA	Streptococcus pneumoniae TIGR4	56.638	97.253	0.551
comA	Streptococcus gordonii str. Challis substr. CH1	55.571	97.39	0.541
comA/nlmT	Streptococcus mutans UA159	53.191	96.841	0.515