Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JRY11_RS12650 Genome accession   NZ_CP070382
Coordinates   1891098..1891250 (+) Length   50 a.a.
NCBI ID   WP_332297123.1    Uniprot ID   -
Organism   Lactococcus lactis strain KF140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1886098..1896250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY11_RS09790 (JRY11_001969) - 1886259..1886738 (+) 480 WP_023189234.1 nucleoside 2-deoxyribosyltransferase -
  JRY11_RS09795 (JRY11_001970) - 1886803..1887855 (+) 1053 WP_023189235.1 BMP family protein -
  JRY11_RS09800 (JRY11_001971) - 1888035..1888958 (+) 924 WP_023189236.1 FAD:protein FMN transferase -
  JRY11_RS09805 (JRY11_001972) - 1888974..1890185 (+) 1212 WP_248554243.1 NAD(P)H-dependent oxidoreductase -
  JRY11_RS12580 recA 1890561..1890695 (+) 135 WP_023189240.1 RecA protein Machinery gene
  JRY11_RS12585 (JRY11_001973) recA 1890769..1891074 (+) 306 WP_023189241.1 RecA protein Machinery gene
  JRY11_RS12650 recA 1891098..1891250 (+) 153 WP_332297123.1 hypothetical protein Machinery gene
  JRY11_RS09815 (JRY11_001974) - 1891510..1892001 (+) 492 WP_023189242.1 MarR family transcriptional regulator -
  JRY11_RS09820 (JRY11_001975) - 1891998..1892789 (+) 792 WP_025017078.1 hypothetical protein -
  JRY11_RS09825 (JRY11_001976) - 1893269..1893670 (-) 402 WP_023189244.1 MerR family transcriptional regulator -
  JRY11_RS09830 (JRY11_001977) - 1893886..1894359 (+) 474 WP_025017077.1 flavodoxin family protein -
  JRY11_RS09835 (JRY11_001978) - 1894376..1895233 (+) 858 WP_023189246.1 aldo/keto reductase -
  JRY11_RS09845 (JRY11_001980) - 1895983..1896183 (+) 201 WP_023189247.1 hypothetical protein -

Sequence

Protein


Download         Length: 50 a.a.        Molecular weight: 6006.92 Da        Isoelectric Point: 9.5944

>NTDB_id=474192 JRY11_RS12650 WP_332297123.1 1891098..1891250(+) (recA) [Lactococcus lactis strain KF140]
MGVVKKINEWYLFNDQKLGRGIFNVKEYLASHQSVFETLKHLTRESLQFY

Nucleotide


Download         Length: 153 bp        

>NTDB_id=474192 JRY11_RS12650 WP_332297123.1 1891098..1891250(+) (recA) [Lactococcus lactis strain KF140]
ATGGGAGTAGTTAAAAAGATAAATGAGTGGTACTTGTTCAACGATCAAAAGTTAGGACGTGGAATCTTTAATGTTAAGGA
GTATCTGGCAAGTCACCAATCCGTATTTGAAACACTTAAACATCTTACTAGAGAGTCGCTACAATTCTACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

38.776

98

0.38
  recA Streptococcus mitis NCTC 12261

36.735

98

0.36
  recA Lactococcus lactis subsp. cremoris KW2

40

90

0.36