Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JTC67_RS17570 Genome accession   NZ_CP070229
Coordinates   3462659..3463783 (+) Length   374 a.a.
NCBI ID   WP_001357500.1    Uniprot ID   -
Organism   Escherichia coli strain EC12     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3457659..3468783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTC67_RS17545 (JTC67_17395) mscL 3457779..3458189 (-) 411 WP_000022449.1 large-conductance mechanosensitive channel protein MscL -
  JTC67_RS17550 (JTC67_17400) trkA 3458319..3459695 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  JTC67_RS17555 (JTC67_17405) rsmB 3459717..3461006 (-) 1290 WP_001357502.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  JTC67_RS17560 (JTC67_17410) fmt 3461058..3462005 (-) 948 WP_001357501.1 methionyl-tRNA formyltransferase -
  JTC67_RS17565 (JTC67_17415) def 3462020..3462529 (-) 510 WP_000114984.1 peptide deformylase -
  JTC67_RS17570 (JTC67_17420) dprA 3462659..3463783 (+) 1125 WP_001357500.1 DNA-protecting protein DprA Machinery gene
  JTC67_RS17575 (JTC67_17425) smg 3463755..3464228 (+) 474 WP_000460673.1 DUF494 family protein Smg -
  JTC67_RS17580 (JTC67_17430) yrdD 3464257..3464799 (+) 543 WP_001592782.1 type I DNA topoisomerase -
  JTC67_RS17585 (JTC67_17435) tsaC 3464804..3465376 (+) 573 WP_001339963.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  JTC67_RS17590 (JTC67_17440) aroE 3465381..3466199 (+) 819 WP_000451233.1 shikimate dehydrogenase -
  JTC67_RS17595 (JTC67_17445) yrdB 3466196..3466453 (+) 258 WP_001070558.1 DUF1488 domain-containing protein -
  JTC67_RS17600 (JTC67_17450) yrdA 3466429..3466983 (-) 555 WP_001286215.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40871.78 Da        Isoelectric Point: 5.8825

>NTDB_id=473664 JTC67_RS17570 WP_001357500.1 3462659..3463783(+) (dprA) [Escherichia coli strain EC12]
MVDTEIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKATLQVN
GVSIAVLGNGLNTIHPRSHAPLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=473664 JTC67_RS17570 WP_001357500.1 3462659..3463783(+) (dprA) [Escherichia coli strain EC12]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTATGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTGT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGTTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTTG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGACCTTACAGGTAAAT
GGCGTTAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCAGCCATGCTCCACTGGCTGCCAGTCTACT
TGAGCAAGGTGGTGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCTTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.238

98.663

0.476
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

49.032

82.888

0.406
  dprA Vibrio cholerae strain A1552

49.032

82.888

0.406
  dprA Haemophilus influenzae Rd KW20

44.214

90.107

0.398
  dprA Glaesserella parasuis strain SC1401

44.214

90.107

0.398
  dprA Legionella pneumophila strain ERS1305867

43.939

88.235

0.388