Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H6S61_RS07110 Genome accession   NZ_CP060047
Coordinates   1403481..1404020 (-) Length   179 a.a.
NCBI ID   WP_011079389.1    Uniprot ID   Q7MHB8
Organism   Vibrio vulnificus strain 2497-87     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1398481..1409020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6S61_RS07090 (H6S61_07090) - 1398898..1399218 (-) 321 WP_011079393.1 MSHA biogenesis protein MshK -
  H6S61_RS07095 (H6S61_07095) gspM 1399211..1399861 (-) 651 WP_017420061.1 type II secretion system protein GspM -
  H6S61_RS07100 (H6S61_07100) - 1399858..1401318 (-) 1461 WP_185892005.1 MSHA biogenesis protein MshI -
  H6S61_RS07105 (H6S61_07105) csrD 1401331..1403328 (-) 1998 WP_045614552.1 RNase E specificity factor CsrD -
  H6S61_RS07110 (H6S61_07110) ssb 1403481..1404020 (-) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  H6S61_RS07115 (H6S61_07115) qstR 1404320..1404967 (+) 648 WP_017420064.1 response regulator transcription factor Regulator
  H6S61_RS07120 (H6S61_07120) galU 1405153..1406025 (+) 873 WP_017420065.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  H6S61_RS07125 (H6S61_07125) uvrA 1406168..1408990 (+) 2823 WP_058667258.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19794.97 Da        Isoelectric Point: 5.2358

>NTDB_id=473543 H6S61_RS07110 WP_011079389.1 1403481..1404020(-) (ssb) [Vibrio vulnificus strain 2497-87]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQQQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QSQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=473543 H6S61_RS07110 WP_011079389.1 1403481..1404020(-) (ssb) [Vibrio vulnificus strain 2497-87]
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCGGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTGTACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTCTACATT
GAAGGACAACTGCAAACGCGTAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACGGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGCCGTCAGCAGCAAGGTGGCGCTCCAGCGATGGGCGGTGCTCCGCAGCAGCAAC
AAGGTGGTTGGGGTCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAACAGGCTCCAGCGCAACAACAGCCAATG
CAGTCTCAGCCTCAGTACAATGAGCCGCCAATGGACTTTGACGACGACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

83.333

100

0.838
  ssb Glaesserella parasuis strain SC1401

53.804

100

0.553
  ssb Neisseria meningitidis MC58

46.237

100

0.48
  ssb Neisseria gonorrhoeae MS11

46.237

100

0.48