Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   H6S61_RS07115 Genome accession   NZ_CP060047
Coordinates   1404320..1404967 (+) Length   215 a.a.
NCBI ID   WP_017420064.1    Uniprot ID   A0A2S3SZL1
Organism   Vibrio vulnificus strain 2497-87     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1399320..1409967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6S61_RS07100 (H6S61_07100) - 1399858..1401318 (-) 1461 WP_185892005.1 MSHA biogenesis protein MshI -
  H6S61_RS07105 (H6S61_07105) csrD 1401331..1403328 (-) 1998 WP_045614552.1 RNase E specificity factor CsrD -
  H6S61_RS07110 (H6S61_07110) ssb 1403481..1404020 (-) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  H6S61_RS07115 (H6S61_07115) qstR 1404320..1404967 (+) 648 WP_017420064.1 response regulator transcription factor Regulator
  H6S61_RS07120 (H6S61_07120) galU 1405153..1406025 (+) 873 WP_017420065.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  H6S61_RS07125 (H6S61_07125) uvrA 1406168..1408990 (+) 2823 WP_058667258.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24730.69 Da        Isoelectric Point: 9.8565

>NTDB_id=473544 H6S61_RS07115 WP_017420064.1 1404320..1404967(+) (qstR) [Vibrio vulnificus strain 2497-87]
MRKSSYARKPFFISLQNEQTPEFVTVLAKQIQMEIPVITPATLMQADPNHRNRILLIDHQQHKVLLREIKNLPLIWKGFE
TVLCNVPNRLTTEELIGFGQCKAIFYRDTTIADMTKGLNSVINGKSWLPRDVSAQLIHYYRNMVCSHTSPVNVDLTMREI
QVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=473544 H6S61_RS07115 WP_017420064.1 1404320..1404967(+) (qstR) [Vibrio vulnificus strain 2497-87]
ATGAGAAAATCTTCTTACGCGCGGAAGCCATTTTTTATCAGTTTGCAAAACGAACAAACTCCTGAGTTCGTCACTGTATT
AGCGAAACAGATTCAAATGGAAATCCCTGTGATTACCCCGGCAACGCTCATGCAAGCCGATCCCAATCATCGTAATCGCA
TCTTATTGATTGATCATCAGCAACATAAGGTGCTGCTGAGAGAGATTAAAAACCTACCGCTAATATGGAAAGGGTTTGAA
ACGGTCCTGTGTAATGTACCTAACCGATTGACGACTGAGGAACTGATTGGCTTTGGCCAGTGCAAAGCGATCTTCTACCG
AGACACAACCATTGCAGACATGACCAAAGGACTAAATTCGGTGATTAATGGTAAGAGCTGGCTGCCACGCGACGTCAGCG
CACAACTCATCCACTACTATCGAAATATGGTTTGCTCACACACTTCACCAGTGAATGTGGATCTCACGATGAGAGAAATT
CAAGTGCTACGCTGCGTGCAGTCTGGCAAATCAAATTCTCAAATCGCCGAAGATCTTTTCATTAGCGAGTTCACCGTAAA
GTCGCATCTCTATCAAACCTTTAGAAAGCTTTCCGTGAAGAATCGTGTCCAAGCGGCCGCGTGGGCTGACCAAAATTTGA
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S3SZL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

60.93

100

0.609
  qstR Vibrio campbellii strain DS40M4

60.93

100

0.609
  qstR Vibrio cholerae strain A1552

46.729

99.535

0.465