Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KN400_RS16285 Genome accession   NC_017454
Coordinates   3313165..3313605 (+) Length   146 a.a.
NCBI ID   WP_010943738.1    Uniprot ID   Q747Z8
Organism   Geobacter sulfurreducens KN400     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3308165..3318605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KN400_RS16265 (KN400_3052) - 3309900..3311585 (-) 1686 WP_010943734.1 ribonuclease J -
  KN400_RS16270 (KN400_3053) - 3311592..3311993 (-) 402 WP_010943735.1 tetratricopeptide repeat protein -
  KN400_RS16275 (KN400_3054) - 3312000..3312179 (-) 180 WP_010943736.1 hypothetical protein -
  KN400_RS16280 (KN400_3055) - 3312181..3312885 (-) 705 WP_014552091.1 lysophospholipid acyltransferase family protein -
  KN400_RS16285 (KN400_3056) ssb 3313165..3313605 (+) 441 WP_010943738.1 single-stranded DNA-binding protein Machinery gene
  KN400_RS16290 (KN400_3057) - 3313709..3314881 (-) 1173 WP_238525091.1 transporter -
  KN400_RS16295 (KN400_3058) dsbI 3314963..3315667 (-) 705 WP_014552093.1 protein-disulfide oxidoreductase DsbI -
  KN400_RS16300 (KN400_3059) - 3315679..3316344 (-) 666 WP_014552094.1 thiol:disulfide interchange protein DsbA/DsbL -
  KN400_RS16305 (KN400_3060) - 3316451..3318256 (-) 1806 WP_014552095.1 aryl-sulfate sulfotransferase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16028.82 Da        Isoelectric Point: 5.3353

>NTDB_id=47338 KN400_RS16285 WP_010943738.1 3313165..3313605(+) (ssb) [Geobacter sulfurreducens KN400]
MASLNKVMLIGNLGKDPEVRYTPAGTAVASFSLATTEKFKNRNGEFEEKTEWHNVVLWGRQAEIAGEYLAKGRTVFIEGR
LQTRKWQDKDGRDRWTTEVVGERMQMLGGKGEGGGGRAGGRGGQESGFGGPSYDEPAFNPDDDIPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=47338 KN400_RS16285 WP_010943738.1 3313165..3313605(+) (ssb) [Geobacter sulfurreducens KN400]
ATGGCCAGTCTCAACAAAGTGATGCTCATCGGCAATCTCGGGAAGGATCCCGAGGTTCGCTACACGCCTGCCGGCACGGC
AGTTGCCAGCTTCTCCCTTGCCACCACCGAAAAATTCAAGAACAGGAACGGCGAATTCGAGGAAAAGACCGAATGGCACA
ACGTGGTCCTCTGGGGCCGCCAGGCCGAAATCGCCGGTGAATACCTGGCCAAGGGGCGGACCGTTTTCATCGAGGGGCGG
CTCCAGACCCGCAAGTGGCAGGACAAGGATGGTCGTGACCGCTGGACCACCGAGGTGGTGGGCGAGCGGATGCAGATGCT
CGGCGGCAAGGGTGAGGGAGGGGGCGGACGCGCAGGCGGACGCGGCGGCCAGGAGAGCGGCTTCGGCGGCCCCTCCTATG
ACGAGCCGGCGTTCAACCCGGACGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q747Z8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

100

0.596
  ssb Neisseria meningitidis MC58

45.665

100

0.541
  ssb Neisseria gonorrhoeae MS11

45.665

100

0.541
  ssb Glaesserella parasuis strain SC1401

42.222

100

0.521
  ssb Latilactobacillus sakei subsp. sakei 23K

32.749

100

0.384

Multiple sequence alignment