Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   H4995_RS02465 Genome accession   NZ_CP059972
Coordinates   457133..457570 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain C220     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 452133..462570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4995_RS09080 - 452756..453778 (+) 1023 WP_240373841.1 sensor histidine kinase KdpD -
  H4995_RS09085 - 453802..454434 (+) 633 WP_251825036.1 DUF4118 domain-containing protein -
  H4995_RS09200 - 454421..454552 (+) 132 WP_256379349.1 hypothetical protein -
  H4995_RS02450 (H4995_02450) uvrB 454547..456520 (-) 1974 WP_146314502.1 excinuclease ABC subunit UvrB -
  H4995_RS02455 (H4995_02455) - 456674..456904 (+) 231 WP_002852327.1 hypothetical protein -
  H4995_RS02460 (H4995_02460) - 456894..457136 (+) 243 WP_002854947.1 hypothetical protein -
  H4995_RS02465 (H4995_02465) Cj0683 457133..457570 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H4995_RS02470 (H4995_02470) priA 457552..459405 (+) 1854 WP_146314501.1 primosomal protein N' -
  H4995_RS02475 (H4995_02475) - 459415..459973 (-) 559 Protein_487 DUF2972 domain-containing protein -
  H4995_RS02480 (H4995_02480) - 460021..461136 (-) 1116 Protein_488 cache domain-containing protein -
  H4995_RS02485 (H4995_02485) - 461337..461846 (-) 510 WP_002867731.1 DUF2393 family protein -
  H4995_RS02490 (H4995_02490) - 461846..462376 (-) 531 WP_002867732.1 DUF2393 domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=472964 H4995_RS02465 WP_002852324.1 457133..457570(+) (Cj0683) [Campylobacter jejuni strain C220]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=472964 H4995_RS02465 WP_002852324.1 457133..457570(+) (Cj0683) [Campylobacter jejuni strain C220]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCCCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1