Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   H4993_RS06030 Genome accession   NZ_CP059966
Coordinates   1153596..1153907 (+) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain C203     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1148596..1158907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4993_RS06020 (H4993_06020) kdsB 1149225..1149944 (+) 720 WP_002868113.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H4993_RS06025 (H4993_06025) nifJ 1150123..1153572 (+) 3450 Protein_1183 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  H4993_RS06030 (H4993_06030) ctsR 1153596..1153907 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  H4993_RS06035 (H4993_06035) ctsD 1153885..1155297 (+) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H4993_RS06040 (H4993_06040) ctsP 1155290..1155898 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H4993_RS06045 (H4993_06045) ctsX 1155902..1156489 (+) 588 WP_002851370.1 membrane protein Machinery gene
  H4993_RS06050 (H4993_06050) ctsE 1156479..1158038 (+) 1560 WP_002868228.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=472820 H4993_RS06030 WP_002855438.1 1153596..1153907(+) (ctsR) [Campylobacter jejuni strain C203]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=472820 H4993_RS06030 WP_002855438.1 1153596..1153907(+) (ctsR) [Campylobacter jejuni strain C203]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1