Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H4993_RS04975 Genome accession   NZ_CP059966
Coordinates   946539..947312 (-) Length   257 a.a.
NCBI ID   WP_002874287.1    Uniprot ID   Q0PAN4
Organism   Campylobacter jejuni strain C203     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 941539..952312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4993_RS04945 (H4993_04945) aspS 941723..943474 (+) 1752 WP_052822853.1 aspartate--tRNA ligase -
  H4993_RS04950 (H4993_04950) adk 943471..944049 (+) 579 WP_002858481.1 adenylate kinase -
  H4993_RS04955 (H4993_04955) ppa 944059..944577 (+) 519 WP_002852138.1 inorganic diphosphatase -
  H4993_RS04960 (H4993_04960) msrA 944618..945115 (+) 498 WP_002874288.1 peptide-methionine (S)-S-oxide reductase MsrA -
  H4993_RS04965 (H4993_04965) - 945291..946130 (-) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  H4993_RS04970 (H4993_04970) ruvX 946159..946542 (-) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  H4993_RS04975 (H4993_04975) dprA 946539..947312 (-) 774 WP_002874287.1 DNA-processing protein DprA Machinery gene
  H4993_RS04980 (H4993_04980) - 947302..948384 (-) 1083 WP_182577095.1 divergent polysaccharide deacetylase family protein -
  H4993_RS04985 (H4993_04985) ilvC 948388..949410 (-) 1023 WP_002873648.1 ketol-acid reductoisomerase -
  H4993_RS04990 (H4993_04990) - 949529..951463 (+) 1935 WP_182577096.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28774.64 Da        Isoelectric Point: 7.6510

>NTDB_id=472816 H4993_RS04975 WP_002874287.1 946539..947312(-) (dprA) [Campylobacter jejuni strain C203]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTATNLLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=472816 H4993_RS04975 WP_002874287.1 946539..947312(-) (dprA) [Campylobacter jejuni strain C203]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTGCACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGCATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGCATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAGCAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTGC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCTGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAGCCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGCAACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATGAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PAN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1
  dprA Helicobacter pylori 26695

48.75

93.385

0.455