Detailed information NTG0472781

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: H4994_RS00035
• Genome accession: NZ_CP059965
• Coordinates: 7805..8986 (+)
• Length: 393 a.a.
• NCBI ID: WP_002868229.1
• Uniprot ID: A0AB36G5F3
• Organism: Campylobacter jejuni strain C219
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2805..13986

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H4994_RS00010 (H4994_00010)	ctsR	3366..3677 (+)	312	WP_002855438.1	hypothetical protein	Machinery gene
H4994_RS00015 (H4994_00015)	ctsD	3655..5067 (+)	1413	WP_002855316.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
H4994_RS00020 (H4994_00020)	ctsP	5060..5668 (+)	609	WP_002851464.1	ATP-binding protein	Machinery gene
H4994_RS00025 (H4994_00025)	ctsX	5672..6259 (+)	588	WP_002858864.1	hypothetical protein	Machinery gene
H4994_RS00030 (H4994_00030)	ctsE	6249..7808 (+)	1560	WP_002858863.1	GspE/PulE family protein	Machinery gene
H4994_RS00035 (H4994_00035)	ctsF	7805..8986 (+)	1182	WP_002868229.1	type II secretion system F family protein	Machinery gene
H4994_RS00040 (H4994_00040)	-	8979..9743 (-)	765	WP_002855821.1	TSUP family transporter	-
H4994_RS00045 (H4994_00045)	-	9747..10511 (-)	765	WP_002851318.1	TIGR02757 family protein	-
H4994_RS00050 (H4994_00050)	flgK	10528..12354 (-)	1827	WP_002858862.1	flagellar hook-associated protein FlgK	-
H4994_RS00055 (H4994_00055)	-	12364..12798 (-)	435	WP_002858861.1	flagellar protein FlgN	-
H4994_RS00060 (H4994_00060)	flgM	12841..13038 (-)	198	WP_002779262.1	flagellar biosynthesis anti-sigma factor FlgM	-
H4994_RS00065 (H4994_00065)	-	13101..13442 (-)	342	WP_002784057.1	hypothetical protein	-

Sequence

Protein

• Length: 393 a.a.
• Molecular weight: 45730.33 Da
• Isoelectric Point: 9.0938

>NTDB_id=472781 H4994_RS00035 WP_002868229.1 7805..8986(+) (ctsF) [Campylobacter jejuni strain C219]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide

• Length: 1182 bp

>NTDB_id=472781 H4994_RS00035 WP_002868229.1 7805..8986(+) (ctsF) [Campylobacter jejuni strain C219]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACACATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTCTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (261-382)

• Type II secretion system (T2SS), protein F (T2SSF) (60-179)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	98.98	99.746	0.987