Detailed information NTG0472777

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: H4994_RS00015
• Genome accession: NZ_CP059965
• Coordinates: 3655..5067 (+)
• Length: 470 a.a.
• NCBI ID: WP_002855316.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain C219
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1..10067

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H4994_RS00005 (H4994_00005)	nifJ	1..3342 (+)	3342	Protein_0	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
H4994_RS00010 (H4994_00010)	ctsR	3366..3677 (+)	312	WP_002855438.1	hypothetical protein	Machinery gene
H4994_RS00015 (H4994_00015)	ctsD	3655..5067 (+)	1413	WP_002855316.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
H4994_RS00020 (H4994_00020)	ctsP	5060..5668 (+)	609	WP_002851464.1	ATP-binding protein	Machinery gene
H4994_RS00025 (H4994_00025)	ctsX	5672..6259 (+)	588	WP_002858864.1	hypothetical protein	Machinery gene
H4994_RS00030 (H4994_00030)	ctsE	6249..7808 (+)	1560	WP_002858863.1	GspE/PulE family protein	Machinery gene
H4994_RS00035 (H4994_00035)	ctsF	7805..8986 (+)	1182	WP_002868229.1	type II secretion system F family protein	Machinery gene
H4994_RS00040 (H4994_00040)	-	8979..9743 (-)	765	WP_002855821.1	TSUP family transporter	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 53106.71 Da
• Isoelectric Point: 6.6184

>NTDB_id=472777 H4994_RS00015 WP_002855316.1 3655..5067(+) (ctsD) [Campylobacter jejuni strain C219]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKIPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide

• Length: 1413 bp

>NTDB_id=472777 H4994_RS00015 WP_002855316.1 3655..5067(+) (ctsD) [Campylobacter jejuni strain C219]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAATATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAATTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAACCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAACAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTCAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (281-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	99.787	100	0.998