Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   H4994_RS00025 Genome accession   NZ_CP059965
Coordinates   5672..6259 (+) Length   195 a.a.
NCBI ID   WP_002858864.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C219     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 672..11259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4994_RS00010 (H4994_00010) ctsR 3366..3677 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  H4994_RS00015 (H4994_00015) ctsD 3655..5067 (+) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H4994_RS00020 (H4994_00020) ctsP 5060..5668 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H4994_RS00025 (H4994_00025) ctsX 5672..6259 (+) 588 WP_002858864.1 hypothetical protein Machinery gene
  H4994_RS00030 (H4994_00030) ctsE 6249..7808 (+) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene
  H4994_RS00035 (H4994_00035) ctsF 7805..8986 (+) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  H4994_RS00040 (H4994_00040) - 8979..9743 (-) 765 WP_002855821.1 TSUP family transporter -
  H4994_RS00045 (H4994_00045) - 9747..10511 (-) 765 WP_002851318.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23331.38 Da        Isoelectric Point: 9.8409

>NTDB_id=472779 H4994_RS00025 WP_002858864.1 5672..6259(+) (ctsX) [Campylobacter jejuni strain C219]
MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRD
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=472779 H4994_RS00025 WP_002858864.1 5672..6259(+) (ctsX) [Campylobacter jejuni strain C219]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTGTTAGT
TATTTTAATATCAGTTATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAGG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAC
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAAAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

98.974

100

0.99