Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   H4994_RS00010 Genome accession   NZ_CP059965
Coordinates   3366..3677 (+) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain C219     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4994_RS00005 (H4994_00005) nifJ 1..3342 (+) 3342 Protein_0 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  H4994_RS00010 (H4994_00010) ctsR 3366..3677 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  H4994_RS00015 (H4994_00015) ctsD 3655..5067 (+) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H4994_RS00020 (H4994_00020) ctsP 5060..5668 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H4994_RS00025 (H4994_00025) ctsX 5672..6259 (+) 588 WP_002858864.1 hypothetical protein Machinery gene
  H4994_RS00030 (H4994_00030) ctsE 6249..7808 (+) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=472776 H4994_RS00010 WP_002855438.1 3366..3677(+) (ctsR) [Campylobacter jejuni strain C219]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=472776 H4994_RS00010 WP_002855438.1 3366..3677(+) (ctsR) [Campylobacter jejuni strain C219]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGGCATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1