Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   H4994_RS00020 Genome accession   NZ_CP059965
Coordinates   5060..5668 (+) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain C219     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 60..10668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4994_RS00010 (H4994_00010) ctsR 3366..3677 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  H4994_RS00015 (H4994_00015) ctsD 3655..5067 (+) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H4994_RS00020 (H4994_00020) ctsP 5060..5668 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H4994_RS00025 (H4994_00025) ctsX 5672..6259 (+) 588 WP_002858864.1 hypothetical protein Machinery gene
  H4994_RS00030 (H4994_00030) ctsE 6249..7808 (+) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene
  H4994_RS00035 (H4994_00035) ctsF 7805..8986 (+) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  H4994_RS00040 (H4994_00040) - 8979..9743 (-) 765 WP_002855821.1 TSUP family transporter -
  H4994_RS00045 (H4994_00045) - 9747..10511 (-) 765 WP_002851318.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=472778 H4994_RS00020 WP_002851464.1 5060..5668(+) (ctsP) [Campylobacter jejuni strain C219]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=472778 H4994_RS00020 WP_002851464.1 5060..5668(+) (ctsP) [Campylobacter jejuni strain C219]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995