Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H5A25_RS18075 Genome accession   NZ_CP059962
Coordinates   4128436..4129962 (+) Length   508 a.a.
NCBI ID   WP_014916972.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain IPO:3710 NAK:380     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4123436..4134962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A25_RS18055 (H5A25_18060) - 4124873..4125799 (-) 927 WP_119872044.1 branched-chain amino acid transaminase -
  H5A25_RS18060 (H5A25_18065) ilvM 4125825..4126085 (-) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  H5A25_RS18065 (H5A25_18070) ilvG 4126143..4127789 (-) 1647 WP_119872043.1 acetolactate synthase 2 catalytic subunit -
  H5A25_RS18070 (H5A25_18075) ilvL 4127930..4128028 (-) 99 WP_071531109.1 ilv operon leader peptide -
  H5A25_RS18075 (H5A25_18080) comM 4128436..4129962 (+) 1527 WP_014916972.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H5A25_RS18080 (H5A25_18085) - 4130020..4130358 (-) 339 WP_010283921.1 DUF413 domain-containing protein -
  H5A25_RS18085 (H5A25_18090) hdfR 4130479..4131306 (+) 828 WP_010283922.1 HTH-type transcriptional regulator HdfR -
  H5A25_RS18090 (H5A25_18095) yjfF 4131328..4132290 (-) 963 WP_119872042.1 galactofuranose ABC transporter, permease protein YjfF -
  H5A25_RS18095 (H5A25_18100) ytfT 4132290..4133300 (-) 1011 WP_119872041.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  H5A25_RS18100 (H5A25_18105) ytfR 4133290..4134807 (-) 1518 WP_040034473.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55498.18 Da        Isoelectric Point: 6.6907

>NTDB_id=472720 H5A25_RS18075 WP_014916972.1 4128436..4129962(+) (comM) [Pectobacterium brasiliense strain IPO:3710 NAK:380]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPIEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGGRD
NIERKHLAEALSYRCMDRLLIQLHKNLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=472720 H5A25_RS18075 WP_014916972.1 4128436..4129962(+) (comM) [Pectobacterium brasiliense strain IPO:3710 NAK:380]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCATATCAGCAG
TGGGCTACCGGCCTTAACGCTGGTGGGCTTACCAGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCTCTCA
TCAATTGCGGATTTACGTTTCCGGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGAGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAGAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCTGCATTGGAAGCCATAAAATCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACCCTGATACCGCAGGGTGAAGCGCTAATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGAGAAGAGGAATTGCTCAGCTGCTCCGACATGACGCCCGTTCCACCGATCGAGGA
AGATACGCTCGATCTGAAGGATATCATCGGTCAGGAACAGGCTAAACGCGCGTTAGAAATCGCGGCGGCAGGCGGTCACA
ACCTGCTCTTGCTAGGGCCTCCGGGAACAGGGAAAACCATGCTGGCGAGTCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGACC
ATTCAGAGCGCCTCACCATAGTTCTTCCATGGCTGCGCTCGTGGGCGGAGGGTCGCTGCCCAAACCCGGAGAAATCTCGC
TCGCCCACAACGGTGTACTATTTTTGGACGAATTACCGGAGTTTGAGCGACGCGTACTGGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCTAAAGTGTGCTACCCAGCACGGGTGCAGCTCGTCGCCGCAATGAA
TCCCAGCCCCTCAGGACACTATCAGGGCGTTCATAACCGGTTGCCGGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGCCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTACTACCACCAGGGGTTTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCGACAATTCGTGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTACTCACTTCACGTGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATCTTGAAAGTCGCGCGCACGATCGCTGACCTAGGCGGTCGGGAT
AATATTGAAAGAAAACATCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGCTTGCTCATCCAGCTCCACAAAAACCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.229

99.606

0.64
  comM Vibrio cholerae strain A1552

64.215

99.016

0.636
  comM Glaesserella parasuis strain SC1401

63.261

100

0.634
  comM Vibrio campbellii strain DS40M4

62.846

99.606

0.626
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.214

100

0.469