Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H5A40_RS04755 Genome accession   NZ_CP059959
Coordinates   1050278..1051804 (+) Length   508 a.a.
NCBI ID   WP_014916972.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain IPO:4062 NAK:237     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1045278..1056804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A40_RS04735 (H5A40_04735) - 1046695..1047621 (-) 927 WP_014916970.1 branched-chain amino acid transaminase -
  H5A40_RS04740 (H5A40_04740) ilvM 1047647..1047907 (-) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  H5A40_RS04745 (H5A40_04745) ilvG 1047985..1049631 (-) 1647 WP_039516435.1 acetolactate synthase 2 catalytic subunit -
  H5A40_RS04750 (H5A40_04750) ilvL 1049772..1049870 (-) 99 WP_071531109.1 ilv operon leader peptide -
  H5A40_RS04755 (H5A40_04755) comM 1050278..1051804 (+) 1527 WP_014916972.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H5A40_RS04760 (H5A40_04760) - 1051862..1052200 (-) 339 WP_010283921.1 DUF413 domain-containing protein -
  H5A40_RS04765 (H5A40_04765) hdfR 1052321..1053148 (+) 828 WP_010294681.1 HTH-type transcriptional regulator HdfR -
  H5A40_RS04770 (H5A40_04770) yjfF 1053170..1054132 (-) 963 WP_010294682.1 galactofuranose ABC transporter, permease protein YjfF -
  H5A40_RS04775 (H5A40_04775) ytfT 1054132..1055142 (-) 1011 WP_205592404.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  H5A40_RS04780 (H5A40_04780) ytfR 1055132..1056649 (-) 1518 WP_205592015.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55498.18 Da        Isoelectric Point: 6.6907

>NTDB_id=472639 H5A40_RS04755 WP_014916972.1 1050278..1051804(+) (comM) [Pectobacterium brasiliense strain IPO:4062 NAK:237]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPIEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGGRD
NIERKHLAEALSYRCMDRLLIQLHKNLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=472639 H5A40_RS04755 WP_014916972.1 1050278..1051804(+) (comM) [Pectobacterium brasiliense strain IPO:4062 NAK:237]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCATATCAGCAG
CGGGCTACCAGCCCTAACGCTGGTGGGCTTACCAGAAACCACCGTCAAGGAAGCCCGCGATCGCGTGCGCAGCGCTCTCA
TCAATTGCGGATTTACGTTTCCGGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGAGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAGAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCTGCATTGGAAGCCATCAAATCAGGCC
GCCAGCTTATCCTTCCAGATGACAATAAACGGGAGATGACCCTGATACCGCAGGGTGAAGCGCTAATGGCTGGGCATTTG
TTGGATGTGTGTGCTTTTCTCAGTGGAGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCCGTTCCACCGATCGAGGA
AGATACGCTCGATCTGAAGGATATCATCGGTCAGGAACAGGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGCCACA
ACTTGCTATTGCTAGGGCCTCCGGGAACGGGGAAAACCATGCTGGCGAGTCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCACTAGAAAGCGCCGCCATCAACAGCCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGACC
ATTCAGAGCGCCTCACCATAGTTCCTCTATGGCTGCGCTCGTGGGCGGAGGGTCGTTGCCTAAACCGGGGGAAATTTCAC
TCGCCCACAACGGTGTACTATTTTTGGACGAATTACCGGAGTTTGAGCGACGCGTACTGGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCTAAGGTGTGCTACCCAGCACGGGTGCAGCTCGTTGCCGCAATGAA
TCCCAGCCCGTCAGGCCACTATCAGGGCGTTCATAACCGGTTGCCGGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTGCTACCACCAGGGGTTTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCGACAATTCGTGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTACTCACTTCACGTGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATCTTGAAAGTCGCGCGCACGATCGCTGACCTAGGCGGTCGGGAT
AATATTGAAAGAAAACATCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGCTTGCTCATCCAGCTCCACAAAAACCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.229

99.606

0.64
  comM Vibrio cholerae strain A1552

64.215

99.016

0.636
  comM Glaesserella parasuis strain SC1401

63.261

100

0.634
  comM Vibrio campbellii strain DS40M4

62.846

99.606

0.626
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.214

100

0.469