Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H5A38_RS01220 Genome accession   NZ_CP059956
Coordinates   273462..274988 (-) Length   508 a.a.
NCBI ID   WP_039510586.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain IPO:4132 NAK:239     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 268462..279988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A38_RS01195 (H5A38_01195) ytfR 268616..270133 (+) 1518 WP_205547153.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  H5A38_RS01200 (H5A38_01200) ytfT 270123..271133 (+) 1011 WP_010283927.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  H5A38_RS01205 (H5A38_01205) yjfF 271133..272095 (+) 963 WP_010294682.1 galactofuranose ABC transporter, permease protein YjfF -
  H5A38_RS01210 (H5A38_01210) hdfR 272117..272944 (-) 828 WP_010283922.1 HTH-type transcriptional regulator HdfR -
  H5A38_RS01215 (H5A38_01215) - 273065..273403 (+) 339 WP_010283921.1 DUF413 domain-containing protein -
  H5A38_RS01220 (H5A38_01220) comM 273462..274988 (-) 1527 WP_039510586.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H5A38_RS01225 (H5A38_01225) ilvL 275396..275494 (+) 99 WP_071531109.1 ilv operon leader peptide -
  H5A38_RS01230 (H5A38_01230) ilvG 275635..277281 (+) 1647 WP_119872043.1 acetolactate synthase 2 catalytic subunit -
  H5A38_RS01235 (H5A38_01235) ilvM 277339..277599 (+) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  H5A38_RS01240 (H5A38_01240) - 277624..278550 (+) 927 WP_014916970.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55471.15 Da        Isoelectric Point: 6.6907

>NTDB_id=472559 H5A38_RS01220 WP_039510586.1 273462..274988(-) (comM) [Pectobacterium brasiliense strain IPO:4132 NAK:239]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPIEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGGRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=472559 H5A38_RS01220 WP_039510586.1 273462..274988(-) (comM) [Pectobacterium brasiliense strain IPO:4132 NAK:239]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCATATCAGCAG
TGGGCTACCAGCCCTAACGCTGGTGGGCTTACCAGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCTCTCA
TCAATTGCGGATTTACGTTTCCGGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGAGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCAGCCTCAGAACAAATCGATGGTGAGAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCTGCATTGGAAGCCATAAAATCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACCCTGATACCGCAGGGTGAAGCGCTAATGGCCGGGCATTTG
TTAGACGTGTGTGCTTTTCTCAGTGGAGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCCGTTCCACCGATCGAGGA
AGATACGCTCGATCTGAAGGATATCATCGGTCAGGAGCAGGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGCCACA
ACTTGCTCTTGCTAGGGCCTCCGGGAACGGGGAAAACCATGCTGGCGAGTCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCGCTGGAAAGTGCCGCCATCAACAGCCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGACC
ATTCAGAGCGCCTCACCATAGTTCTTCCATGGCTGCGCTCGTGGGCGGAGGGTCGCTGCCCAAACCCGGAGAAATCTCGC
TCGCCCACAACGGTGTACTATTTTTGGACGAATTACCGGAGTTTGAGCGACGCGTACTGGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGTACTCGGGCTAAAGTGTGCTACCCAGCACGGGTGCAGCTCGTCGCCGCAATGAA
TCCCAGCCCTTCAGGACACTATCAGGGCGTTCATAACCGGTTGCCGGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTACTACCACCAGGGGTTTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCGACAATTCGTGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTACTCACTTCACGTGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATCTTGAAAGTCGCGCGCACGATCGCTGACCTAGGCGGTCGGGAT
AATATTGAAAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGCTTGCTCATCCAGCTCCACAAAAGTCT
TGAATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.229

99.606

0.64
  comM Vibrio cholerae strain A1552

64.215

99.016

0.636
  comM Glaesserella parasuis strain SC1401

63.261

100

0.634
  comM Vibrio campbellii strain DS40M4

62.846

99.606

0.626
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.214

100

0.469