Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H5A16_RS04655 Genome accession   NZ_CP059955
Coordinates   1035530..1037056 (+) Length   508 a.a.
NCBI ID   WP_014916972.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain IPO:4134 NAK:395     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1030530..1042056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A16_RS04635 (H5A16_04630) - 1031967..1032893 (-) 927 WP_119872044.1 branched-chain amino acid transaminase -
  H5A16_RS04640 (H5A16_04635) ilvM 1032919..1033179 (-) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  H5A16_RS04645 (H5A16_04640) ilvG 1033237..1034883 (-) 1647 WP_119872043.1 acetolactate synthase 2 catalytic subunit -
  H5A16_RS04650 (H5A16_04645) ilvL 1035024..1035122 (-) 99 WP_071531109.1 ilv operon leader peptide -
  H5A16_RS04655 (H5A16_04650) comM 1035530..1037056 (+) 1527 WP_014916972.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H5A16_RS04660 (H5A16_04655) - 1037114..1037452 (-) 339 WP_010283921.1 DUF413 domain-containing protein -
  H5A16_RS04665 (H5A16_04660) hdfR 1037573..1038400 (+) 828 WP_010283922.1 HTH-type transcriptional regulator HdfR -
  H5A16_RS04670 (H5A16_04665) yjfF 1038422..1039384 (-) 963 WP_119872042.1 galactofuranose ABC transporter, permease protein YjfF -
  H5A16_RS04675 (H5A16_04670) ytfT 1039384..1040394 (-) 1011 WP_119872041.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  H5A16_RS04680 (H5A16_04675) ytfR 1040384..1041901 (-) 1518 WP_040034473.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55498.18 Da        Isoelectric Point: 6.6907

>NTDB_id=472542 H5A16_RS04655 WP_014916972.1 1035530..1037056(+) (comM) [Pectobacterium brasiliense strain IPO:4134 NAK:395]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPIEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGGRD
NIERKHLAEALSYRCMDRLLIQLHKNLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=472542 H5A16_RS04655 WP_014916972.1 1035530..1037056(+) (comM) [Pectobacterium brasiliense strain IPO:4134 NAK:395]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCATATCAGCAG
TGGGCTACCGGCCTTAACGCTGGTGGGCTTACCAGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCTCTCA
TCAATTGCGGATTTACGTTTCCGGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGAGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAGAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCTGCATTGGAAGCCATAAAATCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACCCTGATACCGCAGGGTGAAGCGCTAATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGAGAAGAGGAATTGCTCAGCTGCTCCGACATGACGCCCGTTCCACCGATCGAGGA
AGATACGCTCGATCTGAAGGATATCATCGGTCAGGAACAGGCTAAACGCGCGTTAGAAATCGCGGCGGCAGGCGGTCACA
ACCTGCTCTTGCTAGGGCCTCCGGGAACAGGGAAAACCATGCTGGCGAGTCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGACC
ATTCAGAGCGCCTCACCATAGTTCTTCCATGGCTGCGCTCGTGGGCGGAGGGTCGCTGCCCAAACCCGGAGAAATCTCGC
TCGCCCACAACGGTGTACTATTTTTGGACGAATTACCGGAGTTTGAGCGACGCGTACTGGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCTAAAGTGTGCTACCCAGCACGGGTGCAGCTCGTCGCCGCAATGAA
TCCCAGCCCCTCAGGACACTATCAGGGCGTTCATAACCGGTTGCCGGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGCCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTACTACCACCAGGGGTTTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCGACAATTCGTGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTACTCACTTCACGTGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATCTTGAAAGTCGCGCGCACGATCGCTGACCTAGGCGGTCGGGAT
AATATTGAAAGAAAACATCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGCTTGCTCATCCAGCTCCACAAAAACCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.229

99.606

0.64
  comM Vibrio cholerae strain A1552

64.215

99.016

0.636
  comM Glaesserella parasuis strain SC1401

63.261

100

0.634
  comM Vibrio campbellii strain DS40M4

62.846

99.606

0.626
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.214

100

0.469