Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HUU81_RS01155 Genome accession   NZ_CP059888
Coordinates   249296..250822 (-) Length   508 a.a.
NCBI ID   WP_199610438.1    Uniprot ID   -
Organism   Flocculibacter collagenilyticus strain SM1988     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 244296..255822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUU81_RS01120 proB 244799..245896 (+) 1098 WP_199610426.1 glutamate 5-kinase -
  HUU81_RS01125 - 246065..246814 (+) 750 WP_199610427.1 hypothetical protein -
  HUU81_RS01130 - 246858..247400 (+) 543 WP_199610429.1 hypothetical protein -
  HUU81_RS01135 - 247431..247667 (+) 237 WP_199610431.1 hypothetical protein -
  HUU81_RS01140 - 247719..247997 (+) 279 WP_199610432.1 hypothetical protein -
  HUU81_RS01145 - 248438..248626 (-) 189 WP_199610434.1 hypothetical protein -
  HUU81_RS01150 - 248861..249274 (-) 414 WP_199610436.1 PH domain-containing protein -
  HUU81_RS01155 comM 249296..250822 (-) 1527 WP_199610438.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HUU81_RS01160 - 251039..251608 (+) 570 WP_199610440.1 hypothetical protein -
  HUU81_RS01165 - 251676..251873 (-) 198 WP_199610442.1 TRIC cation channel family protein -
  HUU81_RS01170 - 252137..252730 (+) 594 WP_199610444.1 hypothetical protein -
  HUU81_RS01175 - 252832..253437 (-) 606 WP_199610445.1 trimeric intracellular cation channel family protein -
  HUU81_RS01180 leuD 253558..254187 (-) 630 WP_199610447.1 3-isopropylmalate dehydratase small subunit -
  HUU81_RS01185 leuC 254184..255635 (-) 1452 WP_199610449.1 3-isopropylmalate dehydratase large subunit -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55070.15 Da        Isoelectric Point: 7.3823

>NTDB_id=472363 HUU81_RS01155 WP_199610438.1 249296..250822(-) (comM) [Flocculibacter collagenilyticus strain SM1988]
MSLAIVNSRARVGIDAPAVTVEVHLANGLPSFSIVGLPEASVKEAKDRVRSALINAHFEFPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASGQIPLSVLADYEFYGELALSGAVRPIIGEIPTTMAATQANRTCVLPAENAQRAALVSKANILAVDHI
HPLFAHLSGQQALPFFETDCTPKNLLDSTSFTHTDLQDVIGQPMAKRALEIAAAGQHNLLFIGPPGTGKSMLAQRLTSIM
PEMSETEALQSAAIHSVCGQDTNFDNWKQRPFRSPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFDRKVLDVL
REPMETGSVTISRAARQADFPAQFQLIAAMNPSPTGHHDDGRASPDQVLRYLNKLSGPFLDRIDLQLDVPRLPKGALTQA
PERGETSAVVKQRVKQARELQLNRAGKVNALMTNRDLDCYCKLQPSDAQFLEMALEKLNLSARAYHKILKVARTIADLQG
EIHINRQHLSEALGYRAMDRLLNSLKAA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=472363 HUU81_RS01155 WP_199610438.1 249296..250822(-) (comM) [Flocculibacter collagenilyticus strain SM1988]
ATGTCGCTTGCCATTGTAAATAGTCGGGCGCGGGTCGGAATTGACGCGCCAGCTGTCACTGTTGAAGTTCATTTAGCTAA
CGGGTTACCTAGTTTTTCCATTGTCGGATTACCAGAAGCGTCTGTAAAAGAAGCGAAAGATCGAGTGCGTAGTGCACTTA
TCAATGCTCATTTTGAATTTCCAGCTAAACGGATTACCGTTAACCTCGCTCCCGCAGACTTGCCTAAAGAAGGCGGGCGA
TTCGACCTACCCATTGCGATTGGTATTTTAGCGGCCAGCGGACAAATTCCATTGTCGGTGTTAGCGGACTATGAGTTTTA
TGGTGAGTTGGCTCTATCGGGTGCGGTACGACCGATTATCGGAGAAATTCCTACCACCATGGCAGCCACTCAGGCTAATC
GCACCTGTGTGTTACCTGCTGAGAATGCGCAGCGTGCTGCACTTGTTTCTAAAGCCAATATTTTAGCTGTCGACCATATT
CACCCGCTCTTTGCTCACCTAAGCGGACAACAAGCCTTGCCTTTTTTTGAAACCGATTGCACGCCTAAAAACCTGCTTGA
TTCCACTTCATTTACACACACTGATTTACAAGATGTAATTGGCCAACCTATGGCAAAGCGGGCACTGGAAATTGCCGCAG
CGGGTCAACATAACCTGTTATTTATTGGTCCTCCAGGAACAGGTAAGTCTATGTTAGCGCAGCGATTAACAAGCATTATG
CCGGAAATGAGTGAAACAGAAGCATTACAAAGCGCTGCAATACATTCAGTATGTGGGCAAGATACTAATTTTGATAATTG
GAAACAGCGACCTTTTCGCTCGCCTCACCACACTTGTTCTGCCGTTGCTTTAGTGGGTGGAAGTAGTAACCCGAAACCAG
GTGAAATTAGCTTAGCTCACAACGGGGTATTATTTTTAGATGAGTTACCTGAATTTGACCGTAAGGTGTTAGACGTATTA
CGTGAGCCTATGGAAACAGGCTCTGTCACTATTTCAAGAGCAGCAAGGCAGGCTGACTTTCCTGCTCAGTTCCAACTTAT
TGCTGCAATGAATCCAAGTCCTACTGGCCATCACGATGATGGGCGCGCCAGCCCAGATCAAGTATTGCGATATTTAAATA
AACTGTCTGGCCCTTTTCTAGACCGAATTGATCTACAACTTGATGTGCCTAGATTACCCAAAGGCGCCTTAACCCAAGCC
CCCGAACGCGGTGAAACAAGCGCAGTGGTGAAACAGCGTGTCAAACAGGCGCGAGAATTGCAGTTAAATAGGGCTGGCAA
AGTTAACGCGTTAATGACTAATCGGGATCTTGATTGTTACTGTAAATTACAACCTAGCGATGCACAATTTTTAGAAATGG
CGTTAGAAAAATTGAACTTATCGGCACGTGCCTACCACAAAATACTAAAGGTGGCGCGTACCATTGCTGATTTACAAGGT
GAAATCCATATTAATCGGCAACACCTATCAGAAGCACTGGGTTATCGCGCAATGGATCGGTTATTAAACAGTTTAAAGGC
CGCATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.763

99.803

0.596
  comM Vibrio cholerae strain A1552

59.332

100

0.594
  comM Vibrio campbellii strain DS40M4

58.939

100

0.591
  comM Glaesserella parasuis strain SC1401

58.627

100

0.589
  comM Legionella pneumophila str. Paris

48.611

99.213

0.482
  comM Legionella pneumophila strain ERS1305867

48.611

99.213

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.168

99.803

0.451