Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   H4K32_RS17015 Genome accession   NZ_CP059855
Coordinates   3316391..3316999 (-) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain Pm9     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3311391..3321999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4K32_RS16995 dnaD 3311627..3312325 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  H4K32_RS17000 nth 3312344..3313003 (+) 660 WP_003153517.1 endonuclease III -
  H4K32_RS17005 - 3313000..3313491 (+) 492 WP_032857086.1 YpoC family protein -
  H4K32_RS17010 - 3313569..3316352 (-) 2784 WP_079005031.1 PBP1A family penicillin-binding protein -
  H4K32_RS17015 recU 3316391..3316999 (-) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  H4K32_RS17020 - 3317041..3318003 (+) 963 WP_014305287.1 DUF2515 domain-containing protein -
  H4K32_RS17025 sspM 3318047..3318151 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  H4K32_RS17030 - 3318357..3318602 (+) 246 WP_003153527.1 DUF5446 family protein -
  H4K32_RS17035 - 3318648..3319016 (+) 369 WP_003153529.1 YppE family protein -
  H4K32_RS17040 - 3319055..3319237 (-) 183 WP_003153532.1 YppF family protein -
  H4K32_RS17045 - 3319425..3319859 (+) 435 WP_003153534.1 YppG family protein -
  H4K32_RS17050 - 3319889..3320302 (-) 414 WP_069448837.1 hypothetical protein -
  H4K32_RS17055 - 3320441..3320947 (+) 507 WP_003153536.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=472325 H4K32_RS17015 WP_003153521.1 3316391..3316999(-) (recU) [Bacillus velezensis strain Pm9]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=472325 H4K32_RS17015 WP_003153521.1 3316391..3316999(-) (recU) [Bacillus velezensis strain Pm9]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATCGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896