Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   H4K32_RS18650 Genome accession   NZ_CP059855
Coordinates   3675999..3676433 (-) Length   144 a.a.
NCBI ID   WP_003154085.1    Uniprot ID   -
Organism   Bacillus velezensis strain Pm9     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3670999..3681433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4K32_RS18615 - 3671013..3671366 (+) 354 WP_003154073.1 multidrug efflux SMR transporter -
  H4K32_RS18620 - 3671380..3671832 (-) 453 WP_015388205.1 OsmC family protein -
  H4K32_RS18625 - 3671893..3672600 (-) 708 WP_003154076.1 poly-gamma-glutamate hydrolase family protein -
  H4K32_RS18630 - 3672856..3673089 (-) 234 WP_041481863.1 hypothetical protein -
  H4K32_RS18635 - 3673268..3674596 (+) 1329 WP_182274879.1 S8 family peptidase -
  H4K32_RS18640 - 3674789..3675151 (+) 363 WP_003154082.1 hypothetical protein -
  H4K32_RS18645 - 3675184..3675939 (-) 756 WP_003154084.1 YoaK family protein -
  H4K32_RS18650 nucA/comI 3675999..3676433 (-) 435 WP_003154085.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  H4K32_RS18655 - 3676722..3677933 (+) 1212 WP_003154086.1 cytochrome P450 -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15509.42 Da        Isoelectric Point: 6.8606

>NTDB_id=472326 H4K32_RS18650 WP_003154085.1 3675999..3676433(-) (nucA/comI) [Bacillus velezensis strain Pm9]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAAHAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=472326 H4K32_RS18650 WP_003154085.1 3675999..3676433(-) (nucA/comI) [Bacillus velezensis strain Pm9]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCATGCTGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACAGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAACAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTATGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCATCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGCTATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486