Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   I6K20_RS15665 Genome accession   NZ_CP070048
Coordinates   3196128..3196595 (+) Length   155 a.a.
NCBI ID   WP_000338336.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1290     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3191128..3201595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K20_RS15620 (I6K20_15625) rplP 3191238..3191648 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  I6K20_RS15625 (I6K20_15630) rpsC 3191661..3192362 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  I6K20_RS15630 (I6K20_15635) rplV 3192380..3192712 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  I6K20_RS15635 (I6K20_15640) rpsS 3192727..3193005 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  I6K20_RS15640 (I6K20_15645) rplB 3193022..3193843 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  I6K20_RS15645 (I6K20_15650) rplW 3193861..3194163 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  I6K20_RS15650 (I6K20_15655) rplD 3194160..3194765 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  I6K20_RS15655 (I6K20_15660) rplC 3194776..3195405 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  I6K20_RS15660 (I6K20_15665) rpsJ 3195438..3195749 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  I6K20_RS15665 (I6K20_15670) pilD 3196128..3196595 (+) 468 WP_000338336.1 A24 family peptidase Machinery gene
  I6K20_RS15670 (I6K20_15675) bfr 3196592..3197068 (-) 477 WP_000675515.1 bacterioferritin -
  I6K20_RS15675 (I6K20_15680) bfd 3197141..3197335 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  I6K20_RS15680 (I6K20_15685) tuf 3197518..3198702 (-) 1185 WP_000031783.1 elongation factor Tu -
  I6K20_RS15685 (I6K20_15690) fusA 3198773..3200887 (-) 2115 WP_000124703.1 elongation factor G -
  I6K20_RS15690 (I6K20_15695) rpsG 3200984..3201454 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=472212 I6K20_RS15665 WP_000338336.1 3196128..3196595(+) (pilD) [Escherichia coli strain FDAARGOS_1290]
MDAALPFLILYACLSTLLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=472212 I6K20_RS15665 WP_000338336.1 3196128..3196595(+) (pilD) [Escherichia coli strain FDAARGOS_1290]
ATGGACGCTGCCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAACCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGGTTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTTTGCTTATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGTCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368