Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EJP617_RS06880 Genome accession   NC_017445
Coordinates   1514552..1516072 (-) Length   506 a.a.
NCBI ID   WP_014542996.1    Uniprot ID   -
Organism   Erwinia sp. Ejp617     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1509552..1521072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJP617_RS06870 (EJP617_13660) hdfR 1513232..1514059 (-) 828 WP_014542995.1 HTH-type transcriptional regulator HdfR -
  EJP617_RS06875 (EJP617_13670) - 1514180..1514518 (+) 339 WP_012666552.1 DUF413 domain-containing protein -
  EJP617_RS06880 (EJP617_13680) comM 1514552..1516072 (-) 1521 WP_014542996.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EJP617_RS19690 - 1516407..1516505 (+) 99 WP_168371130.1 IlvGEDA operon leader peptide -
  EJP617_RS06885 (EJP617_13690) ilvG 1516646..1518292 (+) 1647 WP_041474369.1 acetolactate synthase 2 catalytic subunit -
  EJP617_RS06890 (EJP617_13700) ilvM 1518289..1518546 (+) 258 WP_014542998.1 acetolactate synthase 2 small subunit -
  EJP617_RS06895 (EJP617_13710) - 1518565..1519491 (+) 927 WP_014542999.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55140.22 Da        Isoelectric Point: 7.5843

>NTDB_id=47202 EJP617_RS06880 WP_014542996.1 1514552..1516072(-) (comM) [Erwinia sp. Ejp617]
MSLSVAYTRAAIGIQAPLVSVEVHLSNGLPALSLVGLPETTVKEARERVRSAILNSGFTFPAKRITVSLAPADLPKEGGR
YDLPIAIAILAASEQVPAEKLIQYEFLGELALTGALRGVQGAIPAALSALDAHRQLILSAENQHDVGLIRHGESLIATHL
LEVCAFLHGKSQLDAAHCEPEEYLPSSGDLNDIIGQQQAKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLMPPLSDR
EALESASLASLISGSDFRRHWRQRPFRAPHHSASLYALVGGGSLPKPGEISLAHNGVLFLDELPEFERRALDALREPLES
GEISISRARAKINYPARFQLIAAMNPSPTGHYRGPHNRSSPQQTLRYLSRLSGPFIDRFDISLEVPLLPAGMLSAQRGES
ESSQQVRERVLLARERQLARCNKMNAAMNNQEIRACCRLTLEDAEWLEQVMTQLGLSVRAWQRILKVARTIADMAGEQCI
GRQHLTEAVSYRAIDRLLVHLQNSLD

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=47202 EJP617_RS06880 WP_014542996.1 1514552..1516072(-) (comM) [Erwinia sp. Ejp617]
ATGTCGCTATCAGTTGCTTACACCCGTGCCGCAATTGGCATTCAGGCACCGCTGGTGTCCGTGGAAGTTCACCTCAGTAA
TGGTCTTCCTGCACTATCTCTGGTTGGATTACCGGAAACCACCGTTAAGGAGGCCCGTGAAAGAGTACGCAGCGCCATCC
TCAACAGCGGGTTTACCTTCCCGGCAAAGCGGATAACCGTTAGCCTGGCACCGGCCGACCTGCCTAAAGAAGGGGGCCGA
TATGACTTACCCATCGCTATCGCCATTCTCGCGGCTTCAGAACAGGTTCCAGCAGAAAAACTTATTCAGTATGAATTCCT
GGGTGAATTGGCCCTTACGGGCGCGCTACGTGGCGTACAGGGCGCAATTCCTGCTGCGCTATCGGCGTTGGACGCTCATC
GGCAACTGATTCTCTCAGCAGAAAATCAGCATGATGTCGGGTTGATTCGACATGGGGAGAGCCTGATCGCCACCCATCTC
CTGGAGGTGTGCGCCTTTTTACATGGTAAGTCACAACTGGATGCTGCGCACTGCGAACCAGAGGAATACCTGCCATCCTC
AGGAGATTTGAACGACATCATCGGCCAACAGCAGGCAAAGCGCGCGCTGGAGATCACGGCAGCCGGAGGGCATAACCTGT
TACTTATTGGCCCGCCGGGAACAGGAAAAACGATGCTGGCGTCCAGACTTAGCGGCCTGATGCCGCCTCTGAGCGATCGT
GAAGCGTTAGAGAGCGCCAGCCTGGCCAGCCTGATATCCGGCAGCGATTTTCGGCGTCACTGGCGTCAGAGACCGTTCCG
CGCCCCTCACCATAGCGCATCACTGTATGCGCTGGTGGGTGGCGGGTCACTGCCTAAACCCGGCGAAATCTCGCTGGCCC
ATAACGGGGTACTGTTTCTGGATGAGCTGCCCGAGTTTGAACGCCGTGCGCTTGATGCGCTACGTGAACCACTTGAGTCG
GGAGAGATCAGCATTTCGCGAGCCAGAGCAAAAATTAACTATCCGGCACGCTTCCAGCTGATTGCAGCAATGAATCCCAG
CCCCACCGGACATTATCGCGGCCCGCATAATCGCTCATCCCCCCAGCAGACATTACGCTATCTCAGCCGCCTGTCTGGTC
CATTCATCGACCGATTTGATATTTCTCTGGAAGTACCCCTGTTGCCAGCAGGAATGTTGAGCGCCCAACGTGGCGAAAGT
GAGTCCAGCCAACAGGTGCGCGAACGGGTGCTGTTGGCCCGTGAACGGCAGCTGGCGCGCTGCAATAAAATGAATGCGGC
AATGAACAACCAGGAAATCCGGGCTTGCTGTAGACTGACGCTTGAGGATGCAGAATGGCTGGAGCAGGTAATGACCCAAC
TGGGTCTGTCGGTGCGCGCCTGGCAACGCATTCTGAAAGTGGCCCGCACTATCGCGGACATGGCGGGGGAGCAATGCATT
GGTCGGCAGCACCTGACCGAAGCTGTTAGCTACCGGGCTATCGACCGCTTACTTGTCCATTTACAAAATAGTCTGGATTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.598

100

0.628
  comM Glaesserella parasuis strain SC1401

61.493

100

0.619
  comM Vibrio cholerae strain A1552

60.558

99.209

0.601
  comM Vibrio campbellii strain DS40M4

60.359

99.209

0.599
  comM Legionella pneumophila str. Paris

50.602

98.419

0.498
  comM Legionella pneumophila strain ERS1305867

50.602

98.419

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.676

100

0.437

Multiple sequence alignment