Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H3303_RS30055 Genome accession   NZ_CP059738
Coordinates   6760570..6762063 (+) Length   497 a.a.
NCBI ID   WP_175555621.1    Uniprot ID   -
Organism   Pseudomonas sp. 29A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6755570..6767063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3303_RS30030 (H3303_30030) sutA 6756110..6756436 (-) 327 WP_007920420.1 transcriptional regulator SutA -
  H3303_RS30035 (H3303_30035) - 6756539..6756964 (-) 426 WP_102901435.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  H3303_RS30040 (H3303_30040) - 6757181..6758518 (-) 1338 WP_175555620.1 ammonium transporter -
  H3303_RS30045 (H3303_30045) glnK 6758557..6758895 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  H3303_RS30050 (H3303_30050) - 6759309..6759569 (+) 261 WP_007920416.1 accessory factor UbiK family protein -
  H3303_RS30055 (H3303_30055) comM 6760570..6762063 (+) 1494 WP_175555621.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H3303_RS30060 (H3303_30060) - 6762369..6763541 (+) 1173 WP_016985844.1 hypothetical protein -
  H3303_RS30065 (H3303_30065) - 6763615..6764157 (+) 543 WP_175555622.1 adenylyl-sulfate kinase -
  H3303_RS30070 (H3303_30070) - 6764160..6764909 (+) 750 WP_064116408.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52972.06 Da        Isoelectric Point: 8.0433

>NTDB_id=471704 H3303_RS30055 WP_175555621.1 6760570..6762063(+) (comM) [Pseudomonas sp. 29A]
MSLSIVHSRAQIGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVYAVDHL
LEAVAHFNGHTPVEPYVSDGLMHASKPYPDLNEVQGQMAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASGAPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GFIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAVKP
GEDSASAAALVAEARERQQKRQGCANAFLDLPGLRRHCRLSTADEAWLESACERLTLSLRSAHRLLKVARTLADLSQEKD
ITREHLAEALQYRPATQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=471704 H3303_RS30055 WP_175555621.1 6760570..6762063(+) (comM) [Pseudomonas sp. 29A]
ATGTCCCTCTCCATCGTCCACAGTCGCGCCCAGATAGGCGTGGAAGCCCCCGCTGTCACCGTCGAAGTCCATCTGGCCAA
CGGACTGCCGTCGCTGACCATGGTCGGGCTGCCCGAGGCGGCGGTGAAGGAGAGCAAGGATCGGGTGCGCAGCGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACCTTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGTGGGCGG
TTTGATCTGGCGATTGCCTTGGGGATTCTGTCGGCGAGTGTGCAGGTGCCGTGCCTGACGCTGGATGATGTGGAATGTCT
GGGTGAGTTGGCGTTGTCCGGCGCAGTACGAGCGGTGCGCGGCGTGTTGCCGGCAGCGTTGGCGGCGCGCAAGGCGGGGC
GTGCGCTGGTGGTGCCGCGGGCGAATGCCGAGGAAGCGTGCCTGGCTTCGGGGTTGAAGGTGTACGCCGTGGATCATTTG
CTCGAGGCGGTGGCGCATTTCAACGGGCATACGCCGGTTGAGCCTTATGTGTCCGACGGGTTGATGCATGCCAGCAAACC
TTATCCCGACTTGAATGAGGTGCAGGGGCAAATGGCGGCGAAACGGGCGTTGCTGATTGCTGCTGCAGGTGCCCATAACC
TGCTGTTCAGCGGGCCGCCGGGCACCGGCAAGACCTTGCTCGCCAGCCGGTTGCCAGGGCTGTTGCCACCCTTGGCCGAG
AGCGAAGCACTAGAGGTAGCGGCAATACAGTCAGTTGCCAGTGGGGCGCCGCTGACCCATTGGCCGCAGCGTCCGTTCCG
CCAACCGCACCACTCGGCATCCGGGCCGGCACTGGTCGGTGGCAGCTCAAAACCGCAACCCGGAGAAATCACCCTCGCCC
ACCACGGCGTGCTGTTCCTCGATGAGCTGCCGGAATTTGATCGCAAGGTGCTGGAAGTCTTACGGGAGCCTTTGGAGTCG
GGGTTCATCGTGATCGCTCGAGCCAAGGATCGCGTGCGGTTTCCCGCGCGCTTTCAGTTGGTGGCGGCGATGAATCCTTG
CCCCTGTGGATATCTTGGCGAACCCAGCGGCAAGTGCTCGTGCACCCCGGACATGGTTCAGCGTTATCGCAACAAGTTGT
CGGGCCCCCTGCTGGACCGGATCGACTTACACCTGACGGTAGCGCGAGAGGCGACAGCGCTGAATCCTGCGGTAAAGCCA
GGAGAAGACAGCGCCAGTGCGGCCGCGTTGGTAGCCGAGGCCCGCGAGCGACAACAGAAACGCCAGGGATGTGCCAATGC
GTTTCTTGATCTGCCCGGCCTGCGTCGCCACTGCAGGTTATCCACAGCCGATGAGGCCTGGCTGGAATCAGCCTGTGAAC
GGCTGACCCTGTCACTGCGCTCGGCGCACCGGTTGCTCAAAGTCGCCAGGACGTTGGCCGATCTGAGTCAGGAAAAGGAC
ATCACGCGCGAACACTTGGCGGAGGCCTTGCAATATCGGCCGGCAACACAATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Vibrio campbellii strain DS40M4

53.939

99.598

0.537
  comM Haemophilus influenzae Rd KW20

53.307

100

0.535
  comM Glaesserella parasuis strain SC1401

52.8

100

0.531
  comM Legionella pneumophila str. Paris

50.2

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.2

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.8

100

0.461