Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H2513_RS05710 Genome accession   NZ_CP059704
Coordinates   1244676..1245887 (-) Length   403 a.a.
NCBI ID   WP_316730679.1    Uniprot ID   -
Organism   Pasteurella multocida strain RCAD0730     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1239676..1250887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2513_RS05680 (H2513_05660) raiA 1240452..1240769 (-) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -
  H2513_RS05685 (H2513_05665) - 1241014..1242387 (-) 1374 WP_169029464.1 sodium:alanine symporter family protein -
  H2513_RS05690 (H2513_05670) - 1242836..1243105 (-) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  H2513_RS05695 (H2513_05675) yacG 1243105..1243308 (-) 204 WP_005719879.1 DNA gyrase inhibitor YacG -
  H2513_RS05700 (H2513_05680) coaE 1243319..1243939 (-) 621 WP_005751078.1 dephospho-CoA kinase -
  H2513_RS05705 (H2513_05685) - 1243954..1244676 (-) 723 WP_316729318.1 A24 family peptidase -
  H2513_RS05710 (H2513_05690) pilC 1244676..1245887 (-) 1212 WP_316730679.1 type II secretion system F family protein Machinery gene
  H2513_RS05715 (H2513_05695) pilB 1245887..1247275 (-) 1389 WP_316729319.1 GspE/PulE family protein Machinery gene
  H2513_RS05720 (H2513_05700) pilA 1247275..1247709 (-) 435 WP_316729321.1 prepilin peptidase-dependent pilin Machinery gene
  H2513_RS05725 (H2513_05705) ampD 1247869..1248435 (+) 567 WP_005751074.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  H2513_RS05730 (H2513_05710) rppH 1249020..1249616 (+) 597 WP_005722417.1 RNA pyrophosphohydrolase -
  H2513_RS05735 (H2513_05715) - 1249619..1250413 (+) 795 WP_005722415.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46051.02 Da        Isoelectric Point: 9.6781

>NTDB_id=471468 H2513_RS05710 WP_316730679.1 1244676..1245887(-) (pilC) [Pasteurella multocida strain RCAD0730]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVHQLHLQRNWQLSIQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASNIELTQWLRQLLCSLESGFSFSTALATQDCYLTKQEYQLISVGESTGKLPLVCAQLAKQRQQSLGLRRKVQ
KMLFYPMLVLVVTLILTSLLLLFIVPQFAEIYANQPLPAFTVLLLNVSAGLRGYAFQLSLLLIFGFIFLLLNARQRVGLY
RLKNCLLHFLPIFKKIAQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHELTEMRLLEEVQLMLKGIAQGYR
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=471468 H2513_RS05710 WP_316730679.1 1244676..1245887(-) (pilC) [Pasteurella multocida strain RCAD0730]
ATGAAAAAATTAAAAATGTTTCGTTGGAAAGGAATAAATCGATTACAGCAAATACAAAAAGGAGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCACCAACTGCATTTACAACGAAATTGGCAGCTTTCTATAC
AACCTAAATATACAGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCATCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCAATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTCGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCTACACAAGATTGTTACTTAACAAAACAGGAATACCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCGCTTGTTTGTGCACAATTAGCGAAACAACGTCAACAATCACTGGGGTTACGACGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGTTGTGACATTGATCTTAACGTCGTTGTTACTACTGTTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAATGTATCGGCAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTCATTTTTTTGCTGTTAAATGCGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGCTTCATTTCCTTCCAATCTTTAAGAAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTGCAACAGGCATTGCAGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGAGCTTACCGAGATGCGACTGCTTGAAGAAGTACAGTTAATGTTAAAGGGGATTGCTCAAGGTTATAGG
TTTTCTGAGGTTATCGGCTCCAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGTGAAATGTTGCAGTATATAGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAATTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGTGTCATTTTATTGGGTATGTATTTACCGATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

47.901

100

0.481
  pilC Haemophilus influenzae 86-028NP

47.654

100

0.479
  pilC Glaesserella parasuis strain SC1401

39.012

100

0.392