Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   CMOL_RS05805 Genome accession   NZ_CP059597
Coordinates   1144421..1145839 (-) Length   472 a.a.
NCBI ID   WP_239820091.1    Uniprot ID   -
Organism   Campylobacter sp. RM10537     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1139421..1150839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMOL_RS05775 - 1139579..1140127 (-) 549 WP_239820085.1 hypothetical protein -
  CMOL_RS05780 - 1140073..1140429 (-) 357 WP_239820086.1 glycosyltransferase -
  CMOL_RS05785 (CMOL_1144) ctsF 1140537..1141715 (-) 1179 WP_239820087.1 type II secretion system F family protein Machinery gene
  CMOL_RS05790 (CMOL_1145) ctsE 1141702..1143258 (-) 1557 WP_239820088.1 GspE/PulE family protein Machinery gene
  CMOL_RS05795 (CMOL_1146) ctsX 1143251..1143835 (-) 585 WP_239820089.1 transformation system protein Machinery gene
  CMOL_RS05800 (CMOL_1147) ctsP 1143832..1144428 (-) 597 WP_239820090.1 ATP-binding protein Machinery gene
  CMOL_RS05805 (CMOL_1148) ctsD 1144421..1145839 (-) 1419 WP_239820091.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CMOL_RS05810 (CMOL_1149) ctsR 1145817..1146110 (-) 294 WP_200281994.1 transformation system protein Machinery gene
  CMOL_RS05815 (CMOL_1150) nifJ 1146162..1149725 (-) 3564 WP_200281976.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CMOL_RS05820 (CMOL_1151) - 1149803..1150450 (-) 648 WP_239820092.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53920.62 Da        Isoelectric Point: 7.4251

>NTDB_id=471201 CMOL_RS05805 WP_239820091.1 1144421..1145839(-) (ctsD) [Campylobacter sp. RM10537]
MIKLIFIKLLFFTQILYALDCQKRLFDINIHENTTLEESLRELANYCSFSIIVKDKIAKERLKTIQNDINIHQMSLDEIF
NLLIKEHDLFYEFNGKVLKISALKTKIFKISYITSVREGQSITKASVDAKPRQSEFKTSSEDNEDNMIKSMEKFDFWQNI
EKEITMLINSSYETYETKAPIVNSNAGIIIVTGTHTQLERVEKYLQKLENRLKKQVIIDVSIIAVNLNKSHSSGINWQNF
NLDFNSKTKSGENSFIHFQNGKGFIKNLGFRANLNFESIINFLSQNGKTYVLSNPKLMALNNQQAIISVGDTINYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGRIMLRINPSLSDFKYPEDKKRQKDPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISRNDGENKNSVNFLSNIPLIGSLFKSNEEISDVTEIVFIITPTIVDNANFPSLRDLGFKYYE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=471201 CMOL_RS05805 WP_239820091.1 1144421..1145839(-) (ctsD) [Campylobacter sp. RM10537]
ATGATAAAATTAATATTTATTAAGCTTTTATTTTTTACTCAAATTCTTTATGCCTTAGATTGCCAAAAACGTTTATTTGA
TATTAATATTCATGAAAATACAACTTTAGAAGAAAGTCTTAGAGAACTTGCAAATTATTGTTCTTTTAGTATTATTGTCA
AAGATAAGATTGCTAAAGAAAGATTAAAAACTATTCAAAATGATATTAATATACATCAAATGAGTTTAGATGAGATTTTT
AATCTTTTGATTAAAGAGCATGATTTATTTTACGAATTTAATGGTAAGGTTTTAAAAATTTCAGCTTTAAAGACAAAAAT
TTTTAAAATAAGTTATATTACTTCAGTTAGAGAAGGGCAGAGTATTACCAAAGCTTCGGTGGATGCAAAACCAAGGCAAA
GTGAATTTAAAACTTCATCTGAAGATAATGAAGATAATATGATTAAAAGCATGGAAAAATTTGATTTTTGGCAAAATATA
GAAAAAGAAATTACCATGTTGATTAATTCTTCCTATGAAACTTATGAAACAAAGGCACCAATAGTCAATTCAAATGCTGG
AATTATAATAGTTACAGGTACTCATACTCAACTAGAACGAGTTGAAAAATATTTGCAAAAACTTGAAAATCGTTTAAAAA
AGCAAGTGATTATTGATGTAAGTATTATTGCTGTTAATCTTAATAAAAGCCATTCTAGCGGTATAAATTGGCAAAATTTT
AATTTAGATTTTAATTCTAAAACAAAAAGTGGTGAAAATTCTTTTATTCATTTTCAAAATGGAAAAGGTTTTATAAAAAA
TTTAGGTTTTAGGGCAAATTTAAATTTTGAATCTATTATTAATTTTCTTTCCCAAAATGGAAAAACTTATGTACTTTCCA
ATCCTAAGCTTATGGCTTTAAATAATCAACAAGCCATTATTTCAGTTGGAGATACAATTAATTATCAAGTTAAAGAAAGC
TCTAAAGGAACAGAAAATGGAACAACTGTGAGTGAAAGTTATAGTAATTATTCTATTTTTATAGGAATTTTGCTTAATAT
TTTGCCAGAAATTTCTGATGATGGTAGAATAATGCTTAGAATTAACCCAAGTTTGAGTGATTTTAAATATCCAGAAGATA
AAAAAAGACAAAAAGATCCACGCACTATTGCTCCAGATACAATACAAAAAAAGTTATCAAGTGTTGTACAAGTTGAAAAT
AATCAAACTCTTATTTTGGGTGGACTTATTTCAAGAAATGATGGTGAAAATAAGAATTCTGTTAATTTTTTATCCAATAT
TCCTTTAATAGGATCTTTATTTAAATCCAACGAGGAAATATCTGATGTTACAGAAATTGTTTTTATTATAACACCCACTA
TAGTCGATAATGCTAATTTTCCAAGTCTTAGGGATTTAGGATTTAAATATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(283-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

77.966

100

0.78