Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   CMOL_RS05800 Genome accession   NZ_CP059597
Coordinates   1143832..1144428 (-) Length   198 a.a.
NCBI ID   WP_239820090.1    Uniprot ID   -
Organism   Campylobacter sp. RM10537     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1138832..1149428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMOL_RS05770 - 1138974..1139369 (-) 396 WP_239820084.1 hypothetical protein -
  CMOL_RS05775 - 1139579..1140127 (-) 549 WP_239820085.1 hypothetical protein -
  CMOL_RS05780 - 1140073..1140429 (-) 357 WP_239820086.1 glycosyltransferase -
  CMOL_RS05785 (CMOL_1144) ctsF 1140537..1141715 (-) 1179 WP_239820087.1 type II secretion system F family protein Machinery gene
  CMOL_RS05790 (CMOL_1145) ctsE 1141702..1143258 (-) 1557 WP_239820088.1 GspE/PulE family protein Machinery gene
  CMOL_RS05795 (CMOL_1146) ctsX 1143251..1143835 (-) 585 WP_239820089.1 transformation system protein Machinery gene
  CMOL_RS05800 (CMOL_1147) ctsP 1143832..1144428 (-) 597 WP_239820090.1 ATP-binding protein Machinery gene
  CMOL_RS05805 (CMOL_1148) ctsD 1144421..1145839 (-) 1419 WP_239820091.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CMOL_RS05810 (CMOL_1149) ctsR 1145817..1146110 (-) 294 WP_200281994.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23761.99 Da        Isoelectric Point: 9.7883

>NTDB_id=471200 CMOL_RS05800 WP_239820090.1 1143832..1144428(-) (ctsP) [Campylobacter sp. RM10537]
MSKIISLREEIFSKINESLRHKTLILICGLSGSGKSVLLQRIAKYHDIDYIDEIFSDEKEFKDIIKKRKKDVLILDEVGM
YEVKILELIRIYSDQMSFILSSHKKIDLFNKDYFKSRFETIFWLEKLNTQELHQYIQLKFNINFSNKAMKIIMKFYKGNL
RYVDKMLKSFYELNLYFKNTKSQDYVLKLCALENGFLK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=471200 CMOL_RS05800 WP_239820090.1 1143832..1144428(-) (ctsP) [Campylobacter sp. RM10537]
ATGAGTAAAATTATTAGTTTAAGAGAAGAAATTTTTTCAAAGATCAATGAGAGTTTAAGACACAAAACCTTAATTTTAAT
ATGTGGTTTGAGTGGTAGTGGTAAAAGTGTTTTATTGCAAAGAATAGCAAAATATCATGATATTGATTATATTGATGAAA
TTTTTTCAGATGAAAAAGAATTCAAGGATATTATTAAAAAAAGAAAAAAGGACGTTTTAATTCTTGATGAAGTGGGCATG
TATGAGGTAAAAATATTAGAACTAATTCGAATTTATAGCGATCAAATGAGTTTTATACTGAGTTCTCATAAAAAAATAGA
TCTTTTTAATAAAGATTATTTTAAAAGTCGTTTTGAAACAATTTTTTGGCTTGAAAAACTTAATACTCAAGAGCTTCATC
AATATATCCAATTAAAATTTAACATTAATTTTTCTAATAAAGCAATGAAAATAATAATGAAATTTTATAAAGGAAATTTA
AGATATGTTGATAAAATGCTTAAAAGTTTTTATGAGCTCAATCTTTATTTTAAAAATACAAAAAGCCAAGATTATGTACT
AAAGCTTTGTGCTTTGGAAAATGGATTTTTAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

53.96

100

0.551